Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30828.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 30 0.29
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 29 0.39
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 2.7
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 27 2.7
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 4.8
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 4.8
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.8
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 6.3
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 8.4
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 8.4
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.29
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = -3
Query: 299 CRGVDVLRAMGCSQYQFSLMIEPPQKYVLFTTNDTWWG*SSMKASCPPTILSSFTMGSLR 120
C +DV G Y +++ + P L T + W G SS++ PT LS L
Sbjct: 283 CSSIDVTLMPGPYDYSSTILPQQPLHPALLTKSKVWLG-SSLQTVTNPTWLSLGNHFVLA 341
Query: 119 NSSK-VGKLEKSRPYAS---CEYSRVNPKKITKCSEDSI 15
S + + L K P S C + + IT S D++
Sbjct: 342 TSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPDTL 380
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 29.5 bits (63), Expect = 0.39
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 QNVDPSTVVLRGGSS-WRKNGTIIPIEKVIAHPEYDNPAFDKDVAVMKT 422
+++D ST++ G S+ W++NG ++ P A D DV +M T
Sbjct: 240 RSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLMAT 288
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 169 PPVPPRFCHRLPWAP 125
PPVPP CH P P
Sbjct: 880 PPVPPALCHAFPPGP 894
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 580 WYTHVHQSFGNRSGSLLSTSPPADDTSVPP 491
W+T + G RSGS++ SP A S P
Sbjct: 1098 WFTTTVPATGTRSGSVIVVSPTAPACSSTP 1127
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 535 LLSTSPPADDTSVPPXIALSIEGSPIGCIVSLN 437
LL+ DD S+P + ++GSP+ + LN
Sbjct: 789 LLAEDSSTDDVSLPHLDTIDLDGSPVPKVPDLN 821
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 472 EGSPIGCIVSLNCIGSLVFITATSLSNAGLSY 377
+G P I+ IG ++F T +L +SY
Sbjct: 112 DGGPASVIIDYTLIGIMMFFTVYALGELAVSY 143
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 43 FFGLTL-LYSQLAYGLDFSNFP--TLEEFLKEPMVNDDRI 153
F G+ LY A+GL F N+P L FL+ M + R+
Sbjct: 546 FLGIVASLYYCFAHGLQFINWPRLLLPSFLRSDMTPEGRV 585
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 266 SPLLSERRPLDSGLKRWKFMAEEWYYHSH*KSDS 367
SP L+E+ D+GLK K + + Y H S+S
Sbjct: 587 SPFLNEKHFYDAGLKDLKILVKNEYPHVEQFSES 620
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 NVDPSTVVLRGGSSWR-KNGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEPIQFSDTMQP 458
NVDP+ L S W+ + + + V++ P+ + F VA++ TK + ++ M
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAIL-TKSVSKDANIMVV 344
Query: 459 IGLPSMDRAMXGG 497
I +AM G
Sbjct: 345 INAAHCIQAMAKG 357
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 LDFSNFPTLEEFLKEPMVNDDRIVGGQEAFIDDYPHQVSF-VVNNT 219
++ PT++E+L+E N+D IV ++ +P VSF + NT
Sbjct: 403 MESEKIPTIDEYLQE-YSNEDEIV---LQVLESFPAAVSFSTITNT 444
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = -3
Query: 461 YRLHCVTKLYRFFGLHNSDI-----LVERRVVILWMRYHFFNGN 345
Y +HC +HNSD+ L++ RV L M ++ N
Sbjct: 987 YNIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASN 1030
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 524 RTKQGAASIPERLMDVRIPVVSDPE 598
R K IP+ MD +PV D E
Sbjct: 224 RAKWSGVKIPQHFMDTLVPVKDDDE 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,829
Number of Sequences: 5004
Number of extensions: 58416
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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