Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30828.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0060 + 26068792-26069363,26069525-26070209 31 0.53
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003 29 3.7
01_05_0666 + 24132641-24132768,24134854-24134860,24135042-241352... 29 3.7
11_01_0791 + 6627961-6630702 28 6.5
09_04_0279 - 16349156-16349788,16352409-16353344 28 6.5
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004 28 6.5
11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395... 27 8.6
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144... 27 8.6
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145... 27 8.6
05_01_0192 + 1394342-1396645 27 8.6
03_06_0290 + 32878040-32880193,32881607-32881720 27 8.6
>01_06_0060 + 26068792-26069363,26069525-26070209
Length = 418
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 222 FLRRLDHQRELILT--AAHCSQNVDPSTVVLRGGSSWRKNG 338
FL + +REL++ +AH ++ + PS + RG SSWR+ G
Sbjct: 137 FLFAANGRRELVVVDLSAHAARRLPPSPLGPRGTSSWRRFG 177
>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
Length = 603
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -1
Query: 193 GGGNHR*RPPVPPRFCHR--LPWAP*GTLPKL 104
GGGNH+ PP PP H+ P AP P +
Sbjct: 49 GGGNHKPPPPTPPPQQHKTTTPSAPPSRAPSV 80
>01_05_0666 +
24132641-24132768,24134854-24134860,24135042-24135230,
24136017-24136185,24136299-24136744,24137540-24137563,
24137736-24137828,24138806-24138884,24138979-24139063,
24139479-24139788,24140471-24140614
Length = 557
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 351 IEKVIAHPEYDNPAFDKDVAVMKTK 425
I K I HP YD+P K A+ KTK
Sbjct: 364 IAKPINHPTYDDPNNGKAYAIFKTK 388
>11_01_0791 + 6627961-6630702
Length = 913
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 492 GGTEVSSAGGDVLSKEPLRFPKD*WTCVYQSCRI 593
GG ++ DV +E ++FP W V Q+C I
Sbjct: 201 GGLGKTTLALDVFEREKIKFPVHAWITVSQTCTI 234
>09_04_0279 - 16349156-16349788,16352409-16353344
Length = 522
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -2
Query: 282 SESNGLQSISVLADDRAAAKI----RIVHHKRYLVGVIIDEGLLSPHDSVIVYHGLLEEL 115
S S G ++I V+ D + A + R+V KRY+ G ++ E S ++ + LLEEL
Sbjct: 165 SSSGGRRAI-VIKDYLSTASLNMITRMVMGKRYVQGEVVHEEPGSARTTLAQFKELLEEL 223
Query: 114 F 112
F
Sbjct: 224 F 224
>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
Length = 681
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 580 WYTHVHQSFGNRSGSLLSTSPPADDTSVPPXIALSIEG-SPIGCIVSLNCIGSLVFI 413
WY SF + + +++ PP S PP I S G +V+ +G+++F+
Sbjct: 258 WYFKSSSSFEQKLAAKVASPPPPSSPSPPPPSLTPITSHSRRGGVVAGATVGAVMFV 314
>11_06_0387 +
23038490-23038662,23039246-23039303,23039471-23039551,
23039640-23039675,23039821-23040060,23040155-23040293,
23041417-23041889
Length = 399
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 182 SSMKASCPPTILSSFTMG--SLRNSSKVGKLEKSR-PYASCEYSRVNPKKI-TKCSEDSI 15
S +K S PP ILS T G S ++ +GK E R Y YS V+ I CSED
Sbjct: 151 SVLKMSQPPRILSWMTRGIASGLDTLFIGKFEAQRAEYWDTLYSSVHVGPILIFCSEDDE 210
Query: 14 L 12
L
Sbjct: 211 L 211
>08_01_0170 -
1440908-1441072,1441539-1441581,1442155-1442619,
1442714-1444149
Length = 702
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 580 WYTHVHQSFGNRSGSLLSTSPPADDTSVPPXIALSIEG-SPIGCIVSLNCIGSLVFI 413
WY SF + + +++ PP S PP I S G +V+ +G+++F+
Sbjct: 261 WYFKSSSSFEQKLAAKVASPPPPSSPSPPPPSLTPITSHSRRGGVVAGATLGAVMFV 317
>05_06_0134 +
25912474-25912561,25912678-25913230,25914063-25914556,
25914804-25914942,25915511-25915582,25915671-25915742,
25917202-25917282,25917385-25917545,25917626-25917894,
25917996-25918122,25918193-25918261,25918366-25918558,
25918605-25919046
Length = 919
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 330 KNGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEPIQFSDTMQP 458
+NGT + K++ P Y +P V ++ T + ++ TMQP
Sbjct: 753 ENGTHVSTNKLVGTPGYVDPEEILIVRLIGTDQMRRYQSTMQP 795
>05_01_0192 + 1394342-1396645
Length = 767
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -1
Query: 538 SLLSTSPPADDTSVPPXIALSIEGSPIGCIVSLNCIGSLVFITATSLSNAGLSYSGCAIT 359
S + SPPA S+PP ++++ +P ++ GS +++ A + + A++
Sbjct: 297 STTTPSPPASTVSMPPTNSVAVASAPANSTAGISNAGSPHPPAHAAVAGAATAGAFVAVS 356
Query: 358 FS 353
F+
Sbjct: 357 FA 358
>03_06_0290 + 32878040-32880193,32881607-32881720
Length = 755
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = -2
Query: 195 LVGVIIDEGLLSPHDSVIVYHGLLEELFQS 106
L+ V+ +G++SP S I+ +GL++E F+S
Sbjct: 642 LLTVVNMDGMMSPRISNIIIYGLIKEGFKS 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,053,296
Number of Sequences: 37544
Number of extensions: 439732
Number of successful extensions: 1168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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