Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30828.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    42   3e-04
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    38   0.004
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    29   3.3  
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    28   4.4  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 255 ILTAAHC-SQNVDPSTVVLRGGSSWRKNGTIIPIEKVIAHPEYDNPAFDK--DVAVMKTK 425
           +LTAAHC +++  P++  +R G     +G+   +  V  HP Y N  F    D A+M+  
Sbjct: 94  VLTAAHCFAKDRRPTSYSVRVGGHRSGSGSPHRVTAVSIHPWY-NIGFPSSYDFAIMRIH 152

Query: 426 EPIQFSDTMQPIGLPSM 476
            P+  S T +PI LPS+
Sbjct: 153 PPVNTSTTARPICLPSL 169


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
 Frame = +3

Query: 255 ILTAAHC---SQNVDPSTVVLRGGSSWRKNGT--IIPIEKVIAHPEYDNPAFDKDVAVMK 419
           ++TAAHC    + V    VV+    + + +G   I  ++++  +P Y +  F  D+A+++
Sbjct: 64  LITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKD-IFSHDIAILE 122

Query: 420 TKEP-IQFSDTMQPIGLPSMDRAMXGGTEVSSAG 518
              P I+F++  QPI LPS D     G +   +G
Sbjct: 123 IPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSG 156


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 598 LRIRHDWYTHVHQSFGNRSGSLLSTSPPADDTSVPPXIALSIE-GSPIGCIVSLNCIGSL 422
           L IRH WY H   +  + +  LLS    +D   + P I L  E    I  ++   C+  L
Sbjct: 693 LEIRHHWYEHADLNARSLNSELLSNHKFSDVDLIYPDIDLEKECCDKILLLIHFLCVAFL 752

Query: 421 V 419
           +
Sbjct: 753 I 753


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 381 DNPAFDKDVAVMKTKEPIQFSDTMQPIGLPS 473
           D  +F+ D+AV + +EPI+FS  + P  LPS
Sbjct: 116 DRESFN-DIAVFELEEPIEFSKDIFPACLPS 145


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 598 LRIRHDWYTHVHQSFGNRSGSLLSTSPPADDTSVPPXIALSI 473
           L IRH WY H   +  + +  LLS    +D   + P I L +
Sbjct: 693 LEIRHHWYEHADLNARSLNSELLSNHKFSDVDLIYPDIDLEV 734


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 598 LRIRHDWYTHVHQSFGNRSGSLLSTSPPADDTSVPPXIALSI 473
           L IRH WY H   +  + +  LLS    +D   + P I L +
Sbjct: 739 LEIRHHWYEHADLNARSLNSELLSNHKFSDVDLIYPDIDLEV 780


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 163 QEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
           QE+ I ++P  VSF V+     GGSIIS
Sbjct: 21  QESKIKNFPWAVSFTVDGVNRLGGSIIS 48



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = +3

Query: 402 DVAVMKTKEPIQFSDTMQPIGLP------SMDRAMXGGTEVSSAGGDVLSKEPLRFPKD 560
           D A+++ ++ I FS+ ++PI LP      +   A+ G   + +  G ++ + P+R  +D
Sbjct: 144 DWAIVEVEKRIHFSENVRPICLPRPNMYYTKSLAVPGWGRIFNESGPLIHEIPMRIDRD 202


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 255 ILTAAHCSQNVDP-STVVLRGGSSWRKNGTIIPIEKVIAHPEYDNPAFDKDVAVMK 419
           ++TAAHC+  +   S V +R   + R+      +++   H  Y+N   D D+A+++
Sbjct: 76  LVTAAHCALQLQTRSFVYVREPKNNRERS--FSVKEAYIHSGYNNQTADNDIALLR 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,535
Number of Sequences: 27780
Number of extensions: 339110
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)