Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30828.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    48   7e-08
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.009
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    27   0.14 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.7  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   1.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   1.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.0 bits (109), Expect = 7e-08
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
 Frame = +3

Query: 192 PSIVCGEQYVFLRRLDHQRELILTAAHC--SQNVDPSTVVLRGGSSWRK----NGTII-P 350
           P ++CG   +        +  +LTAAHC   +N     +V+ G   W      N T++  
Sbjct: 184 PGMICGATII-------SKRYVLTAAHCIIDENTTKLAIVV-GEHDWSSKTETNATVLHS 235

Query: 351 IEKVIAHPEYDNPAFD----KDVAVMKTKEPIQFSDTMQPIGLP 470
           I KVI HP+YD    D     D+A++KT++ I+F D + P  LP
Sbjct: 236 INKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLP 279



 Score = 26.2 bits (55), Expect = 0.24
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 139 NDDRIVGGQEAFIDDYPHQVSFVVNNTY----FCGGSIISE 249
           N  RIVGG    I+++P      +  TY     CG +IIS+
Sbjct: 157 NPSRIVGGTNTGINEFPMMAG--IKRTYEPGMICGATIISK 195


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 121  GTLPKLGNWRNLDRTQVVNIVELIQR 44
            GT PK G +RN DR  +V  V  +QR
Sbjct: 1032 GTRPKRGKYRNYDRDSLVEAVRAVQR 1057


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 225 LRRLDHQRELILTAAHCSQNVDPSTVVLRGGSSWRKNGTIIPIEK 359
           L+RLDHQ      A H  QNV  + V +  G      G  I I K
Sbjct: 510 LKRLDHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRPISISK 554


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/52 (25%), Positives = 19/52 (36%)
 Frame = -1

Query: 511 DDTSVPPXIALSIEGSPIGCIVSLNCIGSLVFITATSLSNAGLSYSGCAITF 356
           D T +PP   L      + C+ S+  +       AT  S+       C I F
Sbjct: 140 DQTGIPPTTCLVFSSGSVSCVPSVKHVAK----CATDFSSWPYDTHRCRINF 187


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 446 VTKLYRFFGLHNSDILVERRVVILWMRYHFFNGNDSTI 333
           +TKL +  G    DIL    V +   RY + +G D  I
Sbjct: 43  LTKLVQ--GFEEQDILTSSGVTLAGNRYIYLSGTDRVI 78


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 522 DVLSKEPLRFPKD*WTC 572
           +VL KEP   P D W C
Sbjct: 82  EVLKKEPYGKPVDIWAC 98


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 315 GSSWRK-NGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEP 431
           GS + K N    PI   I+HP+Y    F K  ++    EP
Sbjct: 316 GSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLACAAEP 355


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 282 NVDPSTVVLRGGSSWRKNGT 341
           N+DPS   L   ++W+K+ T
Sbjct: 384 NLDPSNRKLPAPANWKKDTT 403


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 416 HNSDILVERRVVILWMRYHFFN 351
           +NSDI      + LW+ +  FN
Sbjct: 207 YNSDIFAMIGTIFLWLFWPSFN 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,890
Number of Sequences: 438
Number of extensions: 4504
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)