Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30828.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 31 0.77
At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein co... 29 2.4
At1g20720.1 68414.m02596 helicase-related similar to BRCA1-bindi... 29 2.4
At5g64870.1 68418.m08160 expressed protein 28 5.4
At5g47430.1 68418.m05844 expressed protein 27 7.2
At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH) domain... 27 7.2
At5g54170.1 68418.m06745 expressed protein weak similarity to SP... 27 9.5
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy... 27 9.5
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 27 9.5
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 9.5
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 27 9.5
At1g66550.1 68414.m07561 WRKY family transcription factor simila... 27 9.5
At1g33450.1 68414.m04140 hypothetical protein low similarity to ... 27 9.5
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family... 27 9.5
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family... 27 9.5
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 372 PEYDNPAFDKDVAVMKTKEPIQFSDTMQPIGLPSMDRAMXGGTEVSSAGG 521
P +N A +D V+ T +P+ T+QP+ PS + + G V G
Sbjct: 480 PIQNNEAKTEDTPVLSTVQPVNGFSTIQPVNGPSAVQPVNGPLAVQPVNG 529
>At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein
contains Pfam profile PF01011: PQQ enzyme repeat
Length = 978
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 429 VLWSS*QRHPCRTQGCHTLDALSLFQWE**YH 334
++WS P ++Q C + +SL+QW+ +H
Sbjct: 503 IVWSMLLNSPSQSQSCERPNGVSLYQWQVPHH 534
>At1g20720.1 68414.m02596 helicase-related similar to BRCA1-binding
helicase-like protein BACH1 (GI:13661819) Homo sapiens].;
Length = 1169
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 369 HPEYDNPAFDKDVAVMKTKEPIQFSDTMQPIG--LPSMDRAMXGGTEVSSAGGDVLSKEP 542
H E N A KD + +K KEP+ ++ L S+DR + +GG +K
Sbjct: 1097 HLEVTNEAASKD-STLKHKEPLAETNAAVDKSDVLKSIDRFAYSPNQQQESGGWRTTKSK 1155
Query: 543 LRFPK 557
LR PK
Sbjct: 1156 LRLPK 1160
>At5g64870.1 68418.m08160 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Frame = +3
Query: 15 NGVF*AFRDFLWINSTIF-----TTCVRSRFLQFP----NFGRVPQGAHGKR*QNRGGTG 167
N + A RDFL IN+ I+ T V R LQ N G QG +G
Sbjct: 376 NNDYSAMRDFLMINNGIYQDIAKTNAVAIRDLQPKISVWNHGGAEQGMNGGGKATMNDIA 435
Query: 168 GLHR*LPP 191
GL++ LPP
Sbjct: 436 GLYKMLPP 443
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 27.5 bits (58), Expect = 7.2
Identities = 34/107 (31%), Positives = 44/107 (41%)
Frame = +3
Query: 168 GLHR*LPPPSIVCGEQYVFLRRLDHQRELILTAAHCSQNVDPSTVVLRGGSSWRKNGTII 347
G+ R PPP VC R + I HC N DP+ V R K T I
Sbjct: 198 GMERKTPPPGYVC-------HRCNIPGHFI---QHCPTNGDPNYDVKR-----VKPPTGI 242
Query: 348 PIEKVIAHPEYDNPAFDKDVAVMKTKEPIQFSDTMQPIGLPSMDRAM 488
P ++A P+ VAV+K E F M+ GLPS R++
Sbjct: 243 PKSMLMATPDGSYSLPSGAVAVLKPNED-AFEKEME--GLPSTTRSV 286
>At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain A, Calm-N N-Terminal Domain Of Clathrin
Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2
Complex (GP:13399999) {Homo sapiens}
Length = 692
Score = 27.5 bits (58), Expect = 7.2
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = -3
Query: 299 CRGVDVLRAMGCSQYQFSLMIEPPQKYVLFTTNDTWWG*SSMKASCPPTILSSFTMGSLR 120
C+G+++ R +QF ++ EPPQ + L T + M +L ++T
Sbjct: 278 CKGLELAR-----NFQFPVLREPPQSF-LTTMEEYMRDAPQMVDVTSGPLLLTYTPDDGL 331
Query: 119 NSSKVGKLEKSRPYASCEYSRVNPKKITKCSEDS 18
S VG + +S S V P + T+ S S
Sbjct: 332 TSEDVGPSHEEHETSSPSDSAVVPSEETQLSSQS 365
>At5g54170.1 68418.m06745 expressed protein weak similarity to
SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
{Homo sapiens}
Length = 449
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 580 WYTHVHQSFGNRSGSLLSTSPPADDTSVPPXIALSIEGSPIGCIVSLNCIGSLVFITAT 404
W S NR L ++P + D S+P S+ SP+ S C+ +LV T T
Sbjct: 28 WKPRWVSSSNNRQVKLQCSAPRSFDLSLPSSSPSSVVTSPLKGFGSAPCLKALVCDTWT 86
>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 576
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = -1
Query: 589 RHDWYTHVHQSFGNRSGSLLSTSPPADDTSVPPXIALSIE----GSPIGCIVSLNCIGSL 422
+ +W +H QS G + + P +SIE G P GC V N +G+
Sbjct: 180 QEEWNSHHEQSIGKVRKGTVRIRVMNNKGETIPNATISIEQKKLGYPFGCAVENNILGNQ 239
Query: 421 VF 416
+
Sbjct: 240 AY 241
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 390 AFDKDVAVMKTKEPIQFSDTMQPIGLPSMDRAMXGGTEVSSAGGDV 527
A + D +V T P+Q + Q G P D GT+VS V
Sbjct: 75 AMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTV 120
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 390 AFDKDVAVMKTKEPIQFSDTMQPIGLPSMDRAMXGGTEVSSAGGDV 527
A + D +V T P+Q + Q G P D GT+VS V
Sbjct: 75 AMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTV 120
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 369 HPEYDNPAFDKDVAVMKTKEPIQFSDTMQ 455
H EYD DKDVAV K +E + S ++
Sbjct: 312 HKEYDALVQDKDVAVKKVEEAMLASKEVE 340
>At1g66550.1 68414.m07561 WRKY family transcription factor similar
to DNA-binding protein 3 [Nicotiana tabacum] GI:7406995
Length = 254
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 228 RRLDHQRELILTAAHCSQNVDPSTVVLRGGSSWRKNGTIIPIEKVIAHPE-YDNPAFDKD 404
+++ H+R+L + + N D T+ G +WRK G K AH Y + KD
Sbjct: 81 KQVQHRRKLCVAEGLVNYNHDSRTMCPNDGFTWRKYGQ--KTIKASAHKRCYYRCTYAKD 138
Query: 405 VAVMKTKEPIQFSD 446
TK + D
Sbjct: 139 QNCNATKRVQKIKD 152
>At1g33450.1 68414.m04140 hypothetical protein low similarity to
MtN20 [Medicago truncatula] GI:2598591
Length = 160
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 323 MAEEWYYHSH*KSDSASRV*QPCVRQGCRCYEDQRTYT 436
M+ YY S S S RV PCV C C E+ T+T
Sbjct: 1 MSTNSYYSS--ASSSGFRVCPPCVPSKCWCGEEIITFT 36
>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
protein low similarity to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 349
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 252 LILTAAHCSQNVDPSTVVLRGGSSWRKNGTI 344
L L+ + C +V+ T+ L GG+SW G +
Sbjct: 16 LKLSLSECGCHVEDITIELEGGASWFYQGMV 46
>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
protein low similarity to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 488
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 252 LILTAAHCSQNVDPSTVVLRGGSSWRKNGTI 344
L L+ + C +V+ T+ L GG+SW G +
Sbjct: 155 LKLSLSECGCHVEDITIELEGGASWFYQGMV 185
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,680
Number of Sequences: 28952
Number of extensions: 327936
Number of successful extensions: 967
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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