Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30826.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    31   1.2  
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746...    29   4.7  
01_06_0071 + 26177698-26177796,26178449-26178553,26178636-261787...    28   6.2  

>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
            23187887-23188159,23188275-23188338,23188479-23188744,
            23188951-23189045,23189544-23189718,23190669-23191063,
            23191830-23191953,23192864-23192959,23193049-23193120,
            23194687-23194824,23195369-23195549,23195602-23195963,
            23196944-23197386,23197461-23197763,23197857-23198081,
            23198260-23198350,23198702-23198779,23198939-23199229,
            23199316-23199513,23199681-23200163,23200488-23200562,
            23201163-23201324,23201400-23201729,23201816-23201916,
            23202477-23202581,23202931-23203162,23203913-23204257,
            23204346-23204447,23206010-23206153,23206463-23206551,
            23206979-23207061,23207172-23207287,23207824-23207909,
            23208461-23208560,23209270-23209335
          Length = 2451

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 328  INNIFSSSFSTGWDLKSITCDVNRYEFEALISF-LEPQGPMFRLCYRLLSDTQLKYELPL 504
            I +I  S  ST   L+S  CD  + E    ISF  + +GP  +   RL+++ +L   L L
Sbjct: 1239 IEDIVISGKSTSNSLESPKCDEAKLEPTTFISFDWDNEGPYEKAVERLINEGKLTDALAL 1298

Query: 505  NDYLL 519
            +D  L
Sbjct: 1299 SDRCL 1303


>04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,
            7469505-7469622,7470035-7470067,7470400-7470474,
            7470887-7471043,7471142-7471230,7472041-7472294,
            7472977-7473148,7473250-7473333,7473626-7473730,
            7474055-7474363,7474622-7474756,7476236-7476317,
            7476423-7476502,7476622-7476783,7477071-7477138,
            7478422-7478502,7478634-7478760,7478816-7478879,
            7480808-7480854,7481042-7481335
          Length = 1149

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +1

Query: 211  DESVLYKSEFA--FTREVIELTRIIDQSSSTKDLQTIFPQLINNIFSS 348
            +++ L  S+FA   T+EV  L RI+ Q+    D+Q IF Q++  IF S
Sbjct: 908  EDTDLQPSQFAKSVTKEVSYLHRILSQTLLEADVQLIFRQVV-QIFHS 954


>01_06_0071 +
           26177698-26177796,26178449-26178553,26178636-26178742,
           26179466-26179620,26180140-26180228,26180353-26180875,
           26181568-26181642,26181802-26182022,26182657-26182739,
           26182826-26182937,26183206-26183280,26183346-26183525
          Length = 607

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 314 IVCR---SLVELDWSIILVNSMTSLVKANSDLYKTDSSNREPLFYLFN 180
           ++CR   S+V  + S++L+NS+  L+ A +  +K+       L YLF+
Sbjct: 500 LLCRHMSSIVSQESSLLLLNSLYQLIDARTSTFKSALQLSTTLDYLFS 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,080
Number of Sequences: 37544
Number of extensions: 288057
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)