BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30826.Seq (698 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical ... 31 1.0 L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 28 7.4 AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 28 7.4 AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 28 7.4 U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical pr... 27 9.8 AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 27 9.8 >AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical protein T07D3.9a protein. Length = 441 Score = 30.7 bits (66), Expect = 1.0 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +1 Query: 277 IDQSSSTKDLQTIFPQLINNIFSSSFSTGWD------LKSITCDVNRYEFEALISFLEPQ 438 I + S T+ L+TIFP+ +I S FST D + S C V + + + SF E + Sbjct: 10 ISRFSQTRSLRTIFPKTTVSIASRPFSTDPDSLVDKMVSSTFCHVAKCQPD---SFSEEE 66 Query: 439 GPMFRLCYRLLSDTQLKYELPLN 507 +L R +S + K+ +PL+ Sbjct: 67 KNSKKLEPRTISHSYRKFVIPLS 89 >L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associated protein homologueprotein. Length = 441 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 391 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYE-LPL 504 + ++E E ISF+ P G + YR D QL + +PL Sbjct: 258 LTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPL 296 >AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter than wild-typeprotein 23, isoform b protein. Length = 435 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 391 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYE-LPL 504 + ++E E ISF+ P G + YR D QL + +PL Sbjct: 252 LTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPL 290 >AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter than wild-typeprotein 23, isoform a protein. Length = 441 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 391 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYE-LPL 504 + ++E E ISF+ P G + YR D QL + +PL Sbjct: 258 LTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPL 296 >U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical protein T27A10.7 protein. Length = 383 Score = 27.5 bits (58), Expect = 9.8 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +1 Query: 271 RIIDQSSSTKDLQTIFPQLINNIFSSSFSTGWDLK-SITCDVNRYEFEALIS 423 +I + S TKD+ +P+ + + GWD K + RY E L++ Sbjct: 20 KIAELRSKTKDILATYPEYDTDFSLLRWLMGWDYKIDVIVPKMRYAVETLVN 71 >AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical protein Y6E2A.8 protein. Length = 444 Score = 27.5 bits (58), Expect = 9.8 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = +1 Query: 400 YEFEALISFLEPQGPMFRLCY 462 Y F ++ F+ P P+F++CY Sbjct: 7 YSFFHVLKFVRPGSPLFKICY 27 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,914,226 Number of Sequences: 27780 Number of extensions: 300075 Number of successful extensions: 633 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 633 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1613473434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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