Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30824.Seq
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 139 1e-33
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 135 3e-32
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 135 3e-32
At2g31890.1 68415.m03896 expressed protein 28 4.6
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 28 4.6
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 28 6.1
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 28 6.1
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c... 28 6.1
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 139 bits (337), Expect = 1e-33
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVI 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
IAKIMR RS+A+ LSG+VKEILGT
Sbjct: 112 EIAKIMRPRSIAKELSGTVKEILGT 136
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 512 SVGCTVXGRPPHDLIDDIXSGXLTI 586
SVGCTV G+ P DL ++I SG + I
Sbjct: 139 SVGCTVDGKDPKDLQEEINSGDIDI 163
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 135 bits (326), Expect = 3e-32
Identities = 63/85 (74%), Positives = 77/85 (90%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
IA+IMR RS+A+ LSG+V+EILGT
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 512 SVGCTVXGRPPHDLIDDIXSGXLTI 586
SVGCTV G+ P DL +I G + I
Sbjct: 139 SVGCTVDGKDPKDLQQEIQEGEIEI 163
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 135 bits (326), Expect = 3e-32
Identities = 63/85 (74%), Positives = 77/85 (90%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
IA+IMR RS+A+ LSG+V+EILGT
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 512 SVGCTVXGRPPHDLIDDIXSGXLTI 586
SVGCTV G+ P D+ +I G + I
Sbjct: 139 SVGCTVDGKDPKDIQQEIQDGEVEI 163
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 360 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 467
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -2
Query: 445 IFAMPITSSREMLPLCLIFFCFL 377
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 609 YWKPFNPSMVKXPLXMSSIRSCGGLPSTVHPTDWLC 502
Y +P + V +S RS GG + + PTDW+C
Sbjct: 375 YSQPTGRAGVSRRQEHASRRSYGGSRNMIVPTDWIC 410
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -2
Query: 481 PERYRAIDLFLMIFAMPITSSREMLPLCLIFFCFLRSRGGSLRA 350
P R+ ++ + I + ++ +L LC+++ C+ + R S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688
>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to DEAD box
protein DDX1 [Gallus gallus] GI:16323037, ryanodine
receptor [Caenorhabditis elegans] GI:1871447; contains
Pfam profile PF00622: SPRY domain
Length = 509
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNI 413
HK K L + V+ + V+PS A ++ A KK K+ K N N+
Sbjct: 172 HKKLKQLDCLTSVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNV 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,138
Number of Sequences: 28952
Number of extensions: 297833
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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