Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30823.Seq
         (458 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   3.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   3.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.3  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 153 SNTMKSFV*INCIFTGNTSF 94
           SNT  S + +NC+ TG T+F
Sbjct: 242 SNT-SSMLSLNCLNTGRTNF 260


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 153 SNTMKSFV*INCIFTGNTSF 94
           SNT  S + +NC+ TG T+F
Sbjct: 31  SNT-SSMLSLNCLNTGRTNF 49


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 153 SNTMKSFV*INCIFTGNTSF 94
           SNT  S + +NC+ TG T+F
Sbjct: 31  SNT-SSMLSLNCLNTGRTNF 49


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 211 MGTPDIRVDTRLNKFFGLRESEMFP 285
           MG P  ++D++     GL    M+P
Sbjct: 142 MGIPPYQLDSKTAGSMGLTRPPMYP 166


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 211 MGTPDIRVDTRLNKFFGLRESEMFP 285
           MG P  ++D++     GL    M+P
Sbjct: 34  MGIPPYQLDSKTAGSMGLTRPPMYP 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,270
Number of Sequences: 336
Number of extensions: 1911
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)