Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30823.Seq
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    77   2e-15
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   1.0  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.2  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    25   4.2  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   5.6  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   9.7  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 34/50 (68%), Positives = 42/50 (84%)
 Frame = +1

Query: 103 VTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
           VTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK
Sbjct: 13  VTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNK 62



 Score = 33.9 bits (74), Expect = 0.012
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 240 SLKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 386
           SL + +W +G+RNVP           +D++D A  L+T V  V VA+ K
Sbjct: 59  SLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = -3

Query: 255 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSFV*INCIFTGNTSFMADLPF 76
           E V  S+Y N R  +L ++       CSW +  +S+T  S+          TS       
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSYQVYATASFNRTS------M 121

Query: 75  LSPLGLAIVILSFVYRIQLRKTRD 4
           +S L +A  I+S V +  L K  D
Sbjct: 122 ISTLEIATAIISSVCKPILGKFSD 145


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 430 GVYSWLASTFSVCXPLID 377
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NPKVR*KTDGNSGHSSRHSLKQILWSKGVRNVPF 287
           N  ++ K    S H SR S   +LW   V+ VP+
Sbjct: 48  NKPIKVKQSLQSLHQSRGSTGSVLWKTSVKVVPW 81


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 53  MAKPKGERKGKSAINEVLPVNIQLIYTNDFMVL 151
           M + K  +   ++I++V+PV  +LIYT D  VL
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVL 265


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 375 QQARKSLV*ITYVRNLHHHYVFVKASH 295
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,295
Number of Sequences: 5004
Number of extensions: 32408
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)