Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30821.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   117   7e-27
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   117   7e-27
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   112   2e-25
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   0.97 
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f...    29   3.0  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    27   9.0  
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    27   9.0  
At1g10180.1 68414.m01148 expressed protein                             27   9.0  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  117 bits (282), Expect = 7e-27
 Identities = 51/99 (51%), Positives = 66/99 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F   G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160



 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 42/65 (64%), Positives = 55/65 (84%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67

Query: 242 RKETV 256
           RK+TV
Sbjct: 68  RKDTV 72



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/61 (54%), Positives = 43/61 (70%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*RKKRKH*MLSAMMTSGGCRKQ 689
           VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+K  R+  +          GG RKQ
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVK--REDEERLDEVGYDDVGGVRKQ 215

Query: 690 L 692
           +
Sbjct: 216 M 216


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  117 bits (282), Expect = 7e-27
 Identities = 51/99 (51%), Positives = 66/99 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F   G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67

Query: 242 RKETV 256
           RK+TV
Sbjct: 68  RKDTV 72



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/61 (54%), Positives = 44/61 (72%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*RKKRKH*MLSAMMTSGGCRKQ 689
           VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+K   ++R   +       GG RKQ
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDV--GYDDVGGVRKQ 215

Query: 690 L 692
           +
Sbjct: 216 M 216


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  112 bits (269), Expect = 2e-25
 Identities = 47/99 (47%), Positives = 65/99 (65%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYG RVHIL
Sbjct: 63  LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
           P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F   G
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRG 161



 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = +2

Query: 62  ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67

Query: 239 RRKETV 256
           +RK+TV
Sbjct: 68  KRKDTV 73



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/61 (54%), Positives = 43/61 (70%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKT*RKKRKH*MLSAMMTSGGCRKQ 689
           VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIK  R+  +          GG RKQ
Sbjct: 159 VRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIK--REDEERLDEVGYDDVGGVRKQ 216

Query: 690 L 692
           +
Sbjct: 217 M 217


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 892

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 650 HLVLPLLPSRFNRFTVTVYYGIRSH 576
           +L LPL  SR    TVTV+YG  SH
Sbjct: 474 YLSLPLPSSRTRSMTVTVFYGDGSH 498


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 57  KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 200
           ++ +I  L  Y   R ++ R  P   L+  +SA T +++   +P W NF
Sbjct: 95  RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 36  SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 167
           S NK  I  +IIK   IY P+++ A    + S S   SA TT S
Sbjct: 64  SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104


>At1g10180.1 68414.m01148 expressed protein
          Length = 769

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 182 AKMEQLQLFRGDTVLLKGKRRKETVASCSQTII 280
           +K++QL +  GD +L K K +K  +A  ++T+I
Sbjct: 576 SKLQQLAIIAGDVLLGKEKLQKILLARLTETVI 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,899,977
Number of Sequences: 28952
Number of extensions: 336616
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)