Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30820.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4C87 Cluster: PREDICTED: similar to GA18613-PA...    46   5e-04
UniRef50_Q17L26 Cluster: Protoheme ix farnesyltransferase; n=4; ...    46   5e-04
UniRef50_Q9VKZ1 Cluster: CG5037-PA; n=2; Endopterygota|Rep: CG50...    42   0.008
UniRef50_A7J1L1 Cluster: NADH dehydrogenase subunit 2; n=1; Tric...    36   0.72 
UniRef50_Q7R9A5 Cluster: Erythrocyte membrane-associated antigen...    34   2.2  
UniRef50_Q4RYF0 Cluster: Chromosome 2 SCAF14976, whole genome sh...    34   2.9  
UniRef50_A7RJI6 Cluster: Predicted protein; n=1; Nematostella ve...    34   2.9  
UniRef50_Q12887 Cluster: Protoheme IX farnesyltransferase, mitoc...    34   2.9  
UniRef50_Q5K936 Cluster: Inositol-polyphosphate 5-phosphatase, p...    33   5.1  

>UniRef50_UPI00015B4C87 Cluster: PREDICTED: similar to GA18613-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           GA18613-PA - Nasonia vitripennis
          Length = 420

 Score = 46.4 bits (105), Expect = 5e-04
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 479 APFQLTTFGICAVGTGLVSAAANSINXVFMKYLWMAQMSR 598
           APF L TF  C+VGTGLVSAAAN++N   M+  + AQM+R
Sbjct: 134 APFDLVTFLACSVGTGLVSAAANAVNQ-SMEVPYDAQMAR 172



 Score = 41.1 bits (92), Expect = 0.019
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 297 LKTQTTATVKNKVTQ-DTRVWKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMG 458
           L   TT   +N+     T+ WK        +   +YCLMLSK RLTSLVV+T+MG
Sbjct: 73  LNPDTTVDSQNQSKAIATKTWKWGKIEIDPTKLHKYCLMLSKIRLTSLVVITAMG 127


>UniRef50_Q17L26 Cluster: Protoheme ix farnesyltransferase; n=4;
           Endopterygota|Rep: Protoheme ix farnesyltransferase -
           Aedes aegypti (Yellowfever mosquito)
          Length = 487

 Score = 46.4 bits (105), Expect = 5e-04
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = +2

Query: 479 APFQLTTFGICAVGTGLVSAAANSINXVFMKYLWMAQMSR 598
           APF+L+TF +CAVGT LVS AANSIN V ++  + AQM R
Sbjct: 156 APFELSTFLLCAVGTTLVSGAANSINQV-IETSFDAQMPR 194


>UniRef50_Q9VKZ1 Cluster: CG5037-PA; n=2; Endopterygota|Rep:
           CG5037-PA - Drosophila melanogaster (Fruit fly)
          Length = 391

 Score = 42.3 bits (95), Expect = 0.008
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +2

Query: 479 APFQLTTFGICAVGTGLVSAAANSINXVFMKYLWMAQMSR 598
           A F  TTF +C +GTGLVSAAAN+IN  + +  + +QMSR
Sbjct: 101 AAFDPTTFAMCTLGTGLVSAAANAINQ-YHEVPFDSQMSR 139


>UniRef50_A7J1L1 Cluster: NADH dehydrogenase subunit 2; n=1;
           Trichobilharzia regenti|Rep: NADH dehydrogenase subunit
           2 - Trichobilharzia regenti
          Length = 274

 Score = 35.9 bits (79), Expect = 0.72
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -2

Query: 438 LMMLTVI*IASNNTVPYCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELYFSSFVLLIF 259
           +++L V  +  +  + Y SS +M VF  +LW L    S+ L    +   L  SS  LL F
Sbjct: 185 IVLLVVYFVWGSGVIYYLSSVNMTVFGYVLWLLAVPLSISLYYKIYTCYLLCSSLYLLFF 244

Query: 258 W 256
           W
Sbjct: 245 W 245


>UniRef50_Q7R9A5 Cluster: Erythrocyte membrane-associated antigen;
           n=4; Plasmodium (Vinckeia)|Rep: Erythrocyte
           membrane-associated antigen - Plasmodium yoelii yoelii
          Length = 759

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 RRINLIMSYLKVIHCTLCLKHGYVGVY-SKPVLFKITNNTLFQHLP 258
           +R NL +  + V+ CT  LKH  + VY ++ + F++ NN +  ++P
Sbjct: 9   KRFNLFLISIVVLICTFGLKHNLIIVYKNEDISFRVLNNDIGTNIP 54


>UniRef50_Q4RYF0 Cluster: Chromosome 2 SCAF14976, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 2
           SCAF14976, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 508

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 482 PFQLTTFGICAVGTGLVSAAANSIN 556
           PF   TF + ++GTGL S AANSIN
Sbjct: 57  PFDPLTFLVASLGTGLASCAANSIN 81


>UniRef50_A7RJI6 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 402

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +2

Query: 479 APFQLTTFGICAVGTGLVSAAANSINXVFMKYLWMAQMSR 598
           AP  L TF   ++GTGL SAAANS N  +++  + +QM+R
Sbjct: 135 APMYLDTFLWASLGTGLCSAAANSFNQ-WLEVPFDSQMNR 173


>UniRef50_Q12887 Cluster: Protoheme IX farnesyltransferase,
           mitochondrial precursor; n=28; Euteleostomi|Rep:
           Protoheme IX farnesyltransferase, mitochondrial
           precursor - Homo sapiens (Human)
          Length = 443

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 482 PFQLTTFGICAVGTGLVSAAANSINXVF 565
           PF    F + +VGTGL S AANSIN  F
Sbjct: 183 PFDWPCFLLTSVGTGLASCAANSINQFF 210


>UniRef50_Q5K936 Cluster: Inositol-polyphosphate 5-phosphatase,
           putative; n=2; Filobasidiella neoformans|Rep:
           Inositol-polyphosphate 5-phosphatase, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 1138

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 252 SARISTAQNWRSKVPLKTQTTA-TVKNKV-TQDTRVWKETPSYDRKSNTGQYCLMLSKSR 425
           S   S+  NW S VP+K +T +  V +KV  + T   K     D +  +    + L ++ 
Sbjct: 52  SRLFSSLPNWSSSVPIKIRTVSYNVNDKVPPKGTLELKGLVGGDDEERSDLIVVGLQEAD 111

Query: 426 LTSLVVLTSMGRIRTSTW 479
           L S  +L S G  R  +W
Sbjct: 112 LRSQALLISQGNSRADSW 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,861,434
Number of Sequences: 1657284
Number of extensions: 11871420
Number of successful extensions: 25320
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25313
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)