Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30820.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.48 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 502 WHLRCGYWXSISCSKLYKXXIH 567
           W +  G W  +SCS  ++   H
Sbjct: 403 WSVNAGMWMWLSCSSFFQQFFH 424


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 297 LKTQTTATVKNKVTQDTR 350
           L+ +    +KNKVT DTR
Sbjct: 400 LEIEDWVLLKNKVTSDTR 417


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 462 SCP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 355
           S P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 251 SSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 286


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 462 SCP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 355
           S P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 199 SSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 234


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 462 SCP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 355
           S P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 382 SSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 417


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 318 TVKNKVTQDTRVWKETPSYDRKSN 389
           T+K K T+D  + K  P + R ++
Sbjct: 268 TIKEKYTEDEELNKTKPIWTRNAD 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,543
Number of Sequences: 336
Number of extensions: 3398
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)