Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30820.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    29   0.68 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    29   0.68 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    28   1.2  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   4.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   6.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 442 TTNDVNRDLDSIKQYCPVLLFLSY 371
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 442 TTNDVNRDLDSIKQYCPVLLFLSY 371
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 362 FLPYSGVLGDFILYRCSCLSF 300
           F P SG+ G F++Y C+ L F
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMF 175


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 399 YCLMLSKSRLTSLVVLTSMGRIRTSTWPR-FN 491
           Y ++LS+ +   +   +S+GR+R S WPR FN
Sbjct: 630 YSVLLSRLKERKIHNWSSIGRLRRSEWPRSFN 661


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 405 LMLSKSRLTSLVVLTSMGRIRTSTWPRFNLLPLAF 509
           L L K RLT LVVL++M     + +P  +   LA+
Sbjct: 88  LELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAW 122


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 240  TLPASARISTAQNWRSKVPLKTQTTATVK--NKVTQDTRVW 356
            TL   A +S +  W S +PL+ +T  + K  NK+ Q T  W
Sbjct: 1161 TLNVGAAVSPS--WASNIPLRRRTKVSAKAANKIVQ-THEW 1198


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 439 TNDVNRDLDSIKQYCPVLLFLSYD---GVSFHTLVS 341
           T D   DLD+ + Y P+ +  +Y    G+SF ++ S
Sbjct: 390 TKDATFDLDAYQNYSPIFMSTTYALAFGLSFASITS 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,238
Number of Sequences: 5004
Number of extensions: 52746
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)