Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30820.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0794 + 21265399-21265683,21266047-21266160,21266861-212671...    32   0.40 
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    30   1.6  
01_01_0488 - 3597652-3598761,3599619-3600860                           28   4.9  
08_01_0122 + 967983-968463,970082-970342,970471-971346,971837-97...    27   8.6  

>08_02_0794 +
           21265399-21265683,21266047-21266160,21266861-21267126,
           21267336-21267834
          Length = 387

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 363 TPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMGRIRTSTW 479
           +P++  K ++  YCL+L +    S  + TS GR+ T+ W
Sbjct: 320 SPTFHFKWSSYDYCLVLDQRCSVSPTISTSSGRVTTTAW 358


>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 396 VPYCSSCHMMVFPSILWC--LG*LYSLPLQLSEF*VELYFSSFVLLIFWQMLEECV 235
           VP+ S+C + +F  +  C  LG L  +PL +SE+ + ++  S     F+  + +CV
Sbjct: 393 VPFFSACFLAMFSILNLCFNLGLLPEIPLPVSEYDILVHVVSAEFQNFFSWVLKCV 448


>01_01_0488 - 3597652-3598761,3599619-3600860
          Length = 783

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 484 VSTYYLWHLRCGYWXSI 534
           V   Y+WH  CGYW  +
Sbjct: 327 VEQVYVWHALCGYWGGL 343


>08_01_0122 +
           967983-968463,970082-970342,970471-971346,971837-972327
          Length = 702

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 508 NAKGSKLKRGQVLVRILPIDVNTTNDVNRDLDS 410
           N +GSK+ R      + P+    T +VNRD D+
Sbjct: 283 NEEGSKMARKPESTNVKPLQAPQTMNVNRDCDN 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,751,373
Number of Sequences: 37544
Number of extensions: 317613
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)