Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30820.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMGRIRTSTWPRFNL 494
           W E           QY  +L K+ +  LVVL SMG +  S W   N+
Sbjct: 442 WDEPRLQGANKVMKQYARLLMKTPVRILVVLLSMGLLGISIWGAMNI 488


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 121  ARRINLIMSYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKT 279
            A R+N IM Y K+    L L+ G V  Y  P       + +F+HL E   H T
Sbjct: 1201 AHRLNTIMDYDKI----LVLERGRVAEYGTPQELMEMPDGVFRHLYESHVHHT 1249


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 108 QLLNTII--YSKRIRSSVMHNNTIMFFEY 28
           QL  ++I   +KR+R SV+HNN  + F Y
Sbjct: 373 QLFRSVIDEETKRVRDSVIHNNETLSFTY 401


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +3

Query: 282  RSKVPLKTQTTATVKNKVTQDTRVWKETPS-------YDRKSNTGQYCLMLSKSRLTSLV 440
            R K P     +A+  ++ T D + ++E          ++RK+ TGQ CL    S      
Sbjct: 1621 RGKKPSLRAASASRGHQATPDKQAYREREGLQPPHNRHNRKAETGQSCL----SHCYETA 1676

Query: 441  VLTSMGRIRTSTWPRFNLL 497
            ++    RIR +  PR+++L
Sbjct: 1677 IVMPRKRIRLNGIPRWDML 1695


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,627,183
Number of Sequences: 59808
Number of extensions: 383094
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)