Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30820.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U82010-1|AAC51330.1| 443|Homo sapiens heme A: farnesyltransfera... 34 0.44
U09466-1|AAA21148.1| 443|Homo sapiens heme A:farnesyltransferas... 34 0.44
BT006985-1|AAP35631.1| 443|Homo sapiens COX10 homolog, cytochro... 34 0.44
BC006394-1|AAH06394.1| 443|Homo sapiens COX10 homolog, cytochro... 34 0.44
BC000060-1|AAH00060.1| 443|Homo sapiens COX10 homolog, cytochro... 34 0.44
L25851-1|AAB59359.2| 1179|Homo sapiens integrin alpha E precurso... 31 3.1
BC117207-1|AAI17208.1| 1179|Homo sapiens integrin, alpha E (anti... 31 3.1
BC113436-1|AAI13437.1| 1179|Homo sapiens integrin, alpha E (anti... 31 3.1
AF168787-6|AAF43107.1| 1127|Homo sapiens HUMINAE protein. 31 3.1
AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein. 29 9.5
>U82010-1|AAC51330.1| 443|Homo sapiens heme A: farnesyltransferase
protein.
Length = 443
Score = 33.9 bits (74), Expect = 0.44
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 482 PFQLTTFGICAVGTGLVSAAANSINXVF 565
PF F + +VGTGL S AANSIN F
Sbjct: 183 PFDWPCFLLTSVGTGLASCAANSINQFF 210
>U09466-1|AAA21148.1| 443|Homo sapiens heme A:farnesyltransferase
protein.
Length = 443
Score = 33.9 bits (74), Expect = 0.44
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 482 PFQLTTFGICAVGTGLVSAAANSINXVF 565
PF F + +VGTGL S AANSIN F
Sbjct: 183 PFDWPCFLLTSVGTGLASCAANSINQFF 210
>BT006985-1|AAP35631.1| 443|Homo sapiens COX10 homolog, cytochrome
c oxidase assembly protein, heme A: farnesyltransfera
protein.
Length = 443
Score = 33.9 bits (74), Expect = 0.44
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 482 PFQLTTFGICAVGTGLVSAAANSINXVF 565
PF F + +VGTGL S AANSIN F
Sbjct: 183 PFDWPCFLLTSVGTGLASCAANSINQFF 210
>BC006394-1|AAH06394.1| 443|Homo sapiens COX10 homolog, cytochrome
c oxidase assembly protein, heme A: farnesyltransfera
protein.
Length = 443
Score = 33.9 bits (74), Expect = 0.44
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 482 PFQLTTFGICAVGTGLVSAAANSINXVF 565
PF F + +VGTGL S AANSIN F
Sbjct: 183 PFDWPCFLLTSVGTGLASCAANSINQFF 210
>BC000060-1|AAH00060.1| 443|Homo sapiens COX10 homolog, cytochrome
c oxidase assembly protein, heme A: farnesyltransfera
protein.
Length = 443
Score = 33.9 bits (74), Expect = 0.44
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 482 PFQLTTFGICAVGTGLVSAAANSINXVF 565
PF F + +VGTGL S AANSIN F
Sbjct: 183 PFDWPCFLLTSVGTGLASCAANSINQFF 210
>L25851-1|AAB59359.2| 1179|Homo sapiens integrin alpha E precursor
protein.
Length = 1179
Score = 31.1 bits (67), Expect = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 958 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999
>BC117207-1|AAI17208.1| 1179|Homo sapiens integrin, alpha E (antigen
CD103, human mucosal lymphocyte antigen 1; alpha pol
protein.
Length = 1179
Score = 31.1 bits (67), Expect = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 958 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999
>BC113436-1|AAI13437.1| 1179|Homo sapiens integrin, alpha E (antigen
CD103, human mucosal lymphocyte antigen 1; alpha pol
protein.
Length = 1179
Score = 31.1 bits (67), Expect = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 958 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999
>AF168787-6|AAF43107.1| 1127|Homo sapiens HUMINAE protein.
Length = 1127
Score = 31.1 bits (67), Expect = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 906 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 947
>AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein.
Length = 589
Score = 29.5 bits (63), Expect = 9.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +3
Query: 294 PLKT--QTTATVKNKVTQDTRVWKETPSYDRKSNTGQYCL---MLSKSRLTSLVV-LTSM 455
PL T TT TVK VT T ++ET + ++ L M S +RLTS + T++
Sbjct: 331 PLSTIVATTGTVKTTVTSSTATFRETTTLTSTTDISTESLMTAMTSTTRLTSAITSKTTL 390
Query: 456 GRIRTS 473
++T+
Sbjct: 391 TSLKTT 396
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,858,438
Number of Sequences: 237096
Number of extensions: 1871609
Number of successful extensions: 6475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6475
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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