Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30820.Seq
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p pro...    42   5e-04
AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA...    42   5e-04
BT011133-1|AAR82800.1|  780|Drosophila melanogaster HL01056p pro...    29   4.8  
AY122142-1|AAM52654.1|  682|Drosophila melanogaster HL02867p pro...    29   4.8  
AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse tran...    29   4.8  
AE014298-576|ABC67173.1|  682|Drosophila melanogaster CG32776-PC...    29   4.8  
AE014298-575|AAF45905.3|  682|Drosophila melanogaster CG32776-PA...    29   4.8  
AE014298-574|ABC67172.1| 1059|Drosophila melanogaster CG32776-PD...    29   4.8  
AE014298-573|AAS72338.2| 1058|Drosophila melanogaster CG32776-PB...    29   4.8  

>AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p
           protein.
          Length = 391

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +2

Query: 479 APFQLTTFGICAVGTGLVSAAANSINXVFMKYLWMAQMSR 598
           A F  TTF +C +GTGLVSAAAN+IN  + +  + +QMSR
Sbjct: 101 AAFDPTTFAMCTLGTGLVSAAANAINQ-YHEVPFDSQMSR 139



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMG 458
           W  +P Y     T      LSK RLTSLVV+T+MG
Sbjct: 61  WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMG 94


>AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA
           protein.
          Length = 391

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +2

Query: 479 APFQLTTFGICAVGTGLVSAAANSINXVFMKYLWMAQMSR 598
           A F  TTF +C +GTGLVSAAAN+IN  + +  + +QMSR
Sbjct: 101 AAFDPTTFAMCTLGTGLVSAAANAINQ-YHEVPFDSQMSR 139



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMG 458
           W  +P Y     T      LSK RLTSLVV+T+MG
Sbjct: 61  WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMG 94


>BT011133-1|AAR82800.1|  780|Drosophila melanogaster HL01056p
           protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 TH*HLAPFQLTTFGICAVGTGLVSAAANSINXV 562
           T+  L  F +T+ GIC +G  L S  + SIN V
Sbjct: 304 TYYRLRSFSITSHGICNLGDSLRSRRSRSINSV 336


>AY122142-1|AAM52654.1|  682|Drosophila melanogaster HL02867p
           protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 TH*HLAPFQLTTFGICAVGTGLVSAAANSINXV 562
           T+  L  F +T+ GIC +G  L S  + SIN V
Sbjct: 206 TYYRLRSFSITSHGICNLGDSLRSRRSRSINSV 238


>AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 76

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 260 SGRCWKSVLLVILNKTGFE*TPTYPC 183
           SGR W  +L  +L K GF   P+ PC
Sbjct: 36  SGREWNKLLNEVLQKIGFSSCPSEPC 61


>AE014298-576|ABC67173.1|  682|Drosophila melanogaster CG32776-PC,
           isoform C protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 TH*HLAPFQLTTFGICAVGTGLVSAAANSINXV 562
           T+  L  F +T+ GIC +G  L S  + SIN V
Sbjct: 206 TYYRLRSFSITSHGICNLGDSLRSRRSRSINSV 238


>AE014298-575|AAF45905.3|  682|Drosophila melanogaster CG32776-PA,
           isoform A protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 TH*HLAPFQLTTFGICAVGTGLVSAAANSINXV 562
           T+  L  F +T+ GIC +G  L S  + SIN V
Sbjct: 206 TYYRLRSFSITSHGICNLGDSLRSRRSRSINSV 238


>AE014298-574|ABC67172.1| 1059|Drosophila melanogaster CG32776-PD,
           isoform D protein.
          Length = 1059

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 TH*HLAPFQLTTFGICAVGTGLVSAAANSINXV 562
           T+  L  F +T+ GIC +G  L S  + SIN V
Sbjct: 583 TYYRLRSFSITSHGICNLGDSLRSRRSRSINSV 615


>AE014298-573|AAS72338.2| 1058|Drosophila melanogaster CG32776-PB,
           isoform B protein.
          Length = 1058

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 TH*HLAPFQLTTFGICAVGTGLVSAAANSINXV 562
           T+  L  F +T+ GIC +G  L S  + SIN V
Sbjct: 582 TYYRLRSFSITSHGICNLGDSLRSRRSRSINSV 614


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,956,053
Number of Sequences: 53049
Number of extensions: 565115
Number of successful extensions: 1099
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)