Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30820.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30150.1 68417.m04287 expressed protein                             28   4.1  
At5g40390.1 68418.m04899 raffinose synthase family protein simil...    28   5.4  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    28   5.4  
At1g03010.1 68414.m00273 phototropic-responsive NPH3 family prot...    27   7.2  
At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing ...    27   9.5  
At5g45360.1 68418.m05569 F-box family protein  similar to SKP1 i...    27   9.5  
At1g50910.1 68414.m05724 expressed protein                             27   9.5  

>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -2

Query: 396 VPYCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELYFSS 277
           V +C+    +V+ S++ CLG L+S    +S   ++L+FS+
Sbjct: 227 VDFCNGQGFVVYSSVVDCLGLLFSSKSGMSNDNLDLWFST 266


>At5g40390.1 68418.m04899 raffinose synthase family protein similar
           to galactinol-raffinose galactosyltransferase [Vigna
           angularis] GI:6634701, seed imbibition protein
           GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains
           Pfam profile PF05691: Raffinose synthase or seed
           imbibition protein Sip1
          Length = 783

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 484 VSTYYLWHLRCGYWXSI 534
           V   Y+WH  CGYW  +
Sbjct: 329 VDYIYVWHALCGYWGGL 345


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 450 TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPSILW 346
           +S Q+ M+ ++ +  +    + SS H M+ PS+ W
Sbjct: 417 SSNQIYMMLIVLLILSQDSSFNSSIHKMILPSVPW 451


>At1g03010.1 68414.m00273 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 463 ILPIDVNTTNDVNRDLDSIKQYCPVLLFLSYD 368
           ++PI++N TN+   D+DSI +   + L L  D
Sbjct: 337 LIPINLNGTNNTMYDIDSILRIFSIFLNLDED 368


>At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP4 gi:5059396
           from [Arabidopsis thaliana]; EMBL:AF155817
          Length = 307

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 282 RSKVPLKTQTTATVKNKVTQDTRVWKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMGR 461
           RSK      +++  K   TQD    +E  S    S++    L  S S   + V +T+   
Sbjct: 105 RSKTKQVPSSSSADKPTTTQDDHHVEEKSSTGSHSSSESSSLTASNSTTVAAVSVTAAAE 164

Query: 462 IRTSTWPRFNL 494
           + +S  P F++
Sbjct: 165 VASSVIPGFDM 175


>At5g45360.1 68418.m05569 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 316

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 282 RSKVPLKTQTT---ATVKNKVTQDTRVWKETPSYDRKSNTGQYCL 407
           RS+ PL +Q       + N V +   +WK++     K+ TG  CL
Sbjct: 168 RSQAPLPSQMVDDRIILDNTVLEQVSLWKKSKGLTDKAVTGHICL 212


>At1g50910.1 68414.m05724 expressed protein
          Length = 552

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 291 VPLKTQTTATVKNKVTQDTRVWKETPSYDRKSNTGQYCLMLSKSRLTSL 437
           +P+K  ++A   N + Q     +ET   D+K   G Y L++  ++  SL
Sbjct: 503 LPVKRPSSAITPNTIEQPPLKKQETGEKDKKEEDGFYNLLIRGTQKDSL 551


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,969
Number of Sequences: 28952
Number of extensions: 264939
Number of successful extensions: 516
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)