Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30818.Seq
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   4.3  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    25   4.3  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   5.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   9.8  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    24   9.8  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    24   9.8  

>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 280 SKNSCWMGSVAF*AAAKFLLTIMEVVAALKPTSFDTSIFLIPIDQGISPRIFSFDS 447
           SK +C+M +     A      I +     +PT     IF+ P+ QGI+  IF F S
Sbjct: 70  SKKACYMLAACIFVAGIVRDLIYQNALKQQPT---LGIFMNPLVQGIAKLIFCFGS 122


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 216 RQQGWHLGLCHPRLLFVFPDFI 281
           + +GWHL + H R+  V  D I
Sbjct: 375 KDKGWHLSITHHRMQTVLNDVI 396


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 346 MEVVAALKPTSFDTSIFLIPID 411
           +E+ +AL P  FD S   +PI+
Sbjct: 138 LEIESALPPAMFDASFIFLPIN 159


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 125 NFRDGNAVMSIPGP 166
           NF+ GN VMSI GP
Sbjct: 514 NFQTGNEVMSILGP 527


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 220 SRAGIWDFATRAFCLYSLILSKNSCWM---GSVAF*AAAKFLLTIMEVVAALKPTS 378
           SRAG+      AF  +  +LSKN  W+     V       +LL    V A LKP S
Sbjct: 298 SRAGMGPLPKDAFIKFVQLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVSAFLKPLS 353


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 165 GPGIDMTAFPSLKFEEPKL 109
           G  +D   FPS+ FE+P L
Sbjct: 246 GTEVDSERFPSVDFEDPSL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,194
Number of Sequences: 5004
Number of extensions: 35346
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)