Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30818.Seq
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0619 - 8125611-8127967,8128449-8130123                           31   0.60 
09_02_0495 + 9880714-9881196                                           30   1.0  
10_01_0015 - 187905-188432                                             27   9.7  

>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = -1

Query: 458 LLISLSKLNILGEIP*SIGIRNMLVSKLVGLRAATTSMMVSRNLAAAQKATDPIQQLFLD 279
           LL+ L   N++G+IP ++G    LVS  +GL++ T S ++ + L   Q+    +  L+LD
Sbjct: 329 LLLDLGYNNLIGQIPSALGNITNLVS--LGLQSCTLSGLIPQELGQLQQ----LNALYLD 382


>09_02_0495 + 9880714-9881196
          Length = 160

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +2

Query: 137 GNAVMSIPGPPPYCXXXXXXXXXXXXXTAGLASGTLPPAPSVCIP 271
           G AV S P PPP                 GL  GT PP P   +P
Sbjct: 44  GGAVNSYPPPPPAGSSSSSSSGGGDGGAGGLFGGTYPPPPPGVMP 88


>10_01_0015 - 187905-188432
          Length = 175

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 370 PTSFDTSIFLIPIDQGISPRIF-SFDSEIN 456
           PTS    +FL P   G SP IF + D+E N
Sbjct: 3   PTSLSLFLFLFPSLSGFSPHIFQTVDTEGN 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,248
Number of Sequences: 37544
Number of extensions: 281565
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)