Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30818.Seq
(461 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X99665-1|CAA67979.1| 106|Drosophila melanogaster mitochondrial ... 46 2e-05
BT001763-1|AAN71518.1| 106|Drosophila melanogaster RH08870p pro... 46 2e-05
AE014297-3317|AAF56127.1| 106|Drosophila melanogaster CG4412-PA... 46 2e-05
BT023609-1|AAY85009.1| 159|Drosophila melanogaster IP06415p pro... 40 0.002
AE014296-920|AAF47954.1| 147|Drosophila melanogaster CG12027-PA... 40 0.002
BT024227-1|ABC86289.1| 599|Drosophila melanogaster LP09277p pro... 30 1.7
AE014296-1599|AAF50310.1| 599|Drosophila melanogaster CG4484-PA... 30 1.7
>X99665-1|CAA67979.1| 106|Drosophila melanogaster mitochondrial
ATPase couplingfactor 6 subunit protein.
Length = 106
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = -1
Query: 383 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKARVAK 240
S L G+R T + + A KA+DPIQQLFLDK+REYKQK+ K
Sbjct: 5 SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGK 54
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 258 EGAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDE 94
+ AGGK+ D++P + KQ+G DM FP +F + K+DPI +
Sbjct: 49 KSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103
>BT001763-1|AAN71518.1| 106|Drosophila melanogaster RH08870p
protein.
Length = 106
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = -1
Query: 383 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKARVAK 240
S L G+R T + + A KA+DPIQQLFLDK+REYKQK+ K
Sbjct: 5 SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGK 54
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 258 EGAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDE 94
+ AGGK+ D++P + KQ+G DM FP +F + K+DPI +
Sbjct: 49 KSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103
>AE014297-3317|AAF56127.1| 106|Drosophila melanogaster CG4412-PA
protein.
Length = 106
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = -1
Query: 383 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKARVAK 240
S L G+R T + + A KA+DPIQQLFLDK+REYKQK+ K
Sbjct: 5 SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGK 54
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 258 EGAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDE 94
+ AGGK+ D++P + KQ+G DM FP +F + K+DPI +
Sbjct: 49 KSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103
>BT023609-1|AAY85009.1| 159|Drosophila melanogaster IP06415p
protein.
Length = 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 246 GKVPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 79
GK D P QYGGG G+DM FP K + +DPI P+
Sbjct: 58 GKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 113
Score = 34.7 bits (76), Expect = 0.061
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = -1
Query: 350 SMMVSRNLA--AAQKATDPIQQLFLDKIREYKQKARVAKSQMP 228
S+++ R+++ A+ + DPI Q+FLDK+REY+ K+ K P
Sbjct: 21 SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVDP 63
>AE014296-920|AAF47954.1| 147|Drosophila melanogaster CG12027-PA
protein.
Length = 147
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 246 GKVPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 79
GK D P QYGGG G+DM FP K + +DPI P+
Sbjct: 46 GKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 101
Score = 34.7 bits (76), Expect = 0.061
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = -1
Query: 350 SMMVSRNLA--AAQKATDPIQQLFLDKIREYKQKARVAKSQMP 228
S+++ R+++ A+ + DPI Q+FLDK+REY+ K+ K P
Sbjct: 9 SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVDP 51
>BT024227-1|ABC86289.1| 599|Drosophila melanogaster LP09277p
protein.
Length = 599
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 223 RAGIWDFATRAF-C-LYSLILSKNSCWMGSVAF*AAAKFLLTIMEVVAALKPTSFDTSIF 396
R G W A AF C +YSL ++K W G+ A + I +V L PT + +F
Sbjct: 440 RFGCWGMAIYAFSCSIYSLSVTKLMKWFGTKAVYISGMIYYGIGMLVLGLWPTKWGVLVF 499
>AE014296-1599|AAF50310.1| 599|Drosophila melanogaster CG4484-PA
protein.
Length = 599
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 223 RAGIWDFATRAF-C-LYSLILSKNSCWMGSVAF*AAAKFLLTIMEVVAALKPTSFDTSIF 396
R G W A AF C +YSL ++K W G+ A + I +V L PT + +F
Sbjct: 440 RFGCWGMAIYAFSCSIYSLSVTKLMKWFGTKAVYISGMIYYGIGMLVLGLWPTKWGVLVF 499
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,979,599
Number of Sequences: 53049
Number of extensions: 445683
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1539014778
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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