Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30818.Seq
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47890.1 68414.m05333 disease resistance family protein conta...    30   0.66 
At2g41260.2 68415.m05096 glycine-rich protein / late embryogenes...    27   6.2  
At2g41260.1 68415.m05095 glycine-rich protein / late embryogenes...    27   6.2  

>At1g47890.1 68414.m05333 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1019

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 452 ISLSKLNILGEIP*SIGIRNMLVSKLVG 369
           +SLS  N++GEIP SIG  N L +  VG
Sbjct: 352 LSLSSNNLIGEIPSSIGNLNQLTNFYVG 379


>At2g41260.2 68415.m05096 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 280

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 85  GWWRGRCRYCCRSQAE 100



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 140 GWWRGRCRYCCRSQAE 155



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 195 GWWRGRCRYCCRSQAE 210



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 250 GWWRGRCRYCCRSQAE 265


>At2g41260.1 68415.m05095 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 225

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 85  GWWRGRCRYCCRSQAE 100



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 140 GWWRGRCRYCCRSQAE 155



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 195 GWWRGRCRYCCRSQAE 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,938,194
Number of Sequences: 28952
Number of extensions: 204692
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)