Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30811.Seq
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   116   1e-26
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    27   7.6  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    27   7.6  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/67 (79%), Positives = 61/67 (91%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           +NLTGRLNK  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLG
Sbjct: 63  VNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLG 122

Query: 431 GKILGFF 451
           GKILGFF
Sbjct: 123 GKILGFF 129



 Score =  116 bits (278), Expect = 1e-26
 Identities = 55/62 (88%), Positives = 59/62 (95%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEF IVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +1

Query: 352 TTVWL-PSPYNKWW 390
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 78  YAPWLRFSXRFVANRIDRTVQKKKK 4
           +A WLR+  R   N +++   KKKK
Sbjct: 323 FATWLRYERRINKNDLNKPTNKKKK 347


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 78  YAPWLRFSXRFVANRIDRTVQKKKK 4
           +A WLR+  R   N +++   KKKK
Sbjct: 323 FATWLRYERRINKNDLNKPTNKKKK 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,908,321
Number of Sequences: 27780
Number of extensions: 185051
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)