Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30811.Seq
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   114   3e-26
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   114   3e-26
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   114   3e-26
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   113   8e-26
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         109   1e-24
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    76   2e-14
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          76   2e-14
At1g18390.1 68414.m02297 protein kinase family protein contains ...    28   4.1  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  114 bits (275), Expect = 3e-26
 Identities = 52/67 (77%), Positives = 59/67 (88%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFF 451
           GK+LGFF
Sbjct: 123 GKVLGFF 129



 Score =  106 bits (255), Expect = 7e-24
 Identities = 49/62 (79%), Positives = 57/62 (91%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEF  VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  114 bits (275), Expect = 3e-26
 Identities = 52/67 (77%), Positives = 59/67 (88%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFF 451
           GK+LGFF
Sbjct: 123 GKVLGFF 129



 Score =  106 bits (255), Expect = 7e-24
 Identities = 49/62 (79%), Positives = 57/62 (91%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEF  VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  114 bits (275), Expect = 3e-26
 Identities = 52/67 (77%), Positives = 59/67 (88%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFF 451
           GK+LGFF
Sbjct: 123 GKVLGFF 129



 Score =  106 bits (255), Expect = 7e-24
 Identities = 49/62 (79%), Positives = 57/62 (91%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEF  VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  113 bits (271), Expect = 8e-26
 Identities = 51/67 (76%), Positives = 59/67 (88%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFF 451
           GK+LGFF
Sbjct: 123 GKVLGFF 129



 Score =  105 bits (251), Expect = 2e-23
 Identities = 48/62 (77%), Positives = 56/62 (90%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEF  VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  109 bits (261), Expect = 1e-24
 Identities = 48/67 (71%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLN CGVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++G
Sbjct: 69  VELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVG 128

Query: 431 GKILGFF 451
           GK+LGFF
Sbjct: 129 GKVLGFF 135



 Score =  101 bits (242), Expect = 3e-22
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EF  VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 249 IV 254
           IV
Sbjct: 67  IV 68


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 33/67 (49%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           ++L GR+N C  ++ R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++G
Sbjct: 62  VDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVG 121

Query: 431 GKILGFF 451
           G++LGFF
Sbjct: 122 GQVLGFF 128



 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 27/56 (48%), Positives = 39/56 (69%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGKI 251
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F + D HR G+I
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 33/67 (49%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           ++L GR+N C  ++ R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++G
Sbjct: 62  VDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVG 121

Query: 431 GKILGFF 451
           G++LGFF
Sbjct: 122 GQVLGFF 128



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 28/56 (50%), Positives = 39/56 (69%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGKI 251
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F + D HR G+I
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 147 IRPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGKIV 254
           +RPC   +   LT +  +G+  E  +VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,357,789
Number of Sequences: 28952
Number of extensions: 177330
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)