Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30807.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   109   2e-25
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   109   2e-25
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   3.6  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   4.8  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   6.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.4  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  109 bits (263), Expect = 2e-25
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = -3

Query: 467 MVRMNVLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 288
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 287 IVVNLTGRLNK 255
           IV+ L GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 32/45 (71%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
 Frame = -2

Query: 252 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEAR 121
           GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR
Sbjct: 73  GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEAR 117


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  109 bits (263), Expect = 2e-25
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = -3

Query: 467 MVRMNVLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 288
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 287 IVVNLTGRLNK 255
           IV+ L GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 32/45 (71%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
 Frame = -2

Query: 252 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEAR 121
           GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR
Sbjct: 73  GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEAR 117


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 281 VNLTGRLNKVVSFHLVLMFPSTILKDGLICS 189
           V+L  +   +  F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 188 PHDSLVT*SLQQVVASWTMKKPEENXLEEK 99
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 334 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKXSLNTFIRTMAK 474
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 329 IGEFEIVDDHRAGKIVVNLTGRLNKVVSFHL 237
           IGE  I+ D+RA  I++ + GR    V FH+
Sbjct: 535 IGELRILVDYRAQSIILPIFGR---PVPFHI 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,442
Number of Sequences: 5004
Number of extensions: 29339
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)