Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30807.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   120   4e-28
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   120   4e-28
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   120   4e-28
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   120   4e-28
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         115   2e-26
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          72   2e-13
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    71   3e-13
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.7  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    27   7.0  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  120 bits (290), Expect = 4e-28
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = -3

Query: 467 MVRMNVLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 288
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 287 IVVNLTGRLNK 255
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
 Frame = -2

Query: 252 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 118
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARR
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  120 bits (290), Expect = 4e-28
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = -3

Query: 467 MVRMNVLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 288
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 287 IVVNLTGRLNK 255
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 36/46 (78%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
 Frame = -2

Query: 252 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 118
           GVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARR 118


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  120 bits (290), Expect = 4e-28
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = -3

Query: 467 MVRMNVLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 288
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 287 IVVNLTGRLNK 255
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
 Frame = -2

Query: 252 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 118
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARR
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  120 bits (290), Expect = 4e-28
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = -3

Query: 467 MVRMNVLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 288
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 287 IVVNLTGRLNK 255
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
 Frame = -2

Query: 252 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 118
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARR
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  115 bits (276), Expect = 2e-26
 Identities = 54/70 (77%), Positives = 61/70 (87%)
 Frame = -3

Query: 467 MVRMNVLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 288
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 287 IVVNLTGRLN 258
           IVV L GRLN
Sbjct: 67  IVVELNGRLN 76



 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 34/46 (73%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
 Frame = -2

Query: 252 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 118
           GVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+
Sbjct: 79  GVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARK 124


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/65 (49%), Positives = 46/65 (70%)
 Frame = -3

Query: 452 VLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 273
           +L+D L++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 272 TGRLN 258
            GR+N
Sbjct: 65  QGRVN 69



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
 Frame = -2

Query: 237 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEA 124
           R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA
Sbjct: 77  RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEA 115


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 31/65 (47%), Positives = 46/65 (70%)
 Frame = -3

Query: 452 VLSDXLKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 273
           +L+D L++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 272 TGRLN 258
            GR+N
Sbjct: 65  QGRVN 69



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
 Frame = -2

Query: 237 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEA 124
           R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA
Sbjct: 77  RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEA 115


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 389 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 282
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 244 NDTTLFSLPVRFTTILPAL*SSTI 315
           N++++FS P   TT++P L SS+I
Sbjct: 177 NNSSIFSTPPPVTTVMPTLPSSSI 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,449,480
Number of Sequences: 28952
Number of extensions: 157559
Number of successful extensions: 289
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)