Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30803.Seq
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    97   1e-21
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    97   1e-21

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 45/68 (66%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWTN-LLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
           + L GR+NKCGVISPRF+V + D  +W N LLPSRQ G +VLTTS GIM H EAR K  G
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAG 122

Query: 431 GKILGFFF 454
           GKILGFF+
Sbjct: 123 GKILGFFY 130



 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 45/62 (72%), Positives = 52/62 (83%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR +VL+D L +I NAE+RG+RQVLI P SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 45/68 (66%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWTN-LLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
           + L GR+NKCGVISPRF+V + D  +W N LLPSRQ G +VLTTS GIM H EAR K  G
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAG 122

Query: 431 GKILGFFF 454
           GKILGFF+
Sbjct: 123 GKILGFFY 130



 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 45/62 (72%), Positives = 52/62 (83%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR +VL+D L +I NAE+RG+RQVLI P SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,269
Number of Sequences: 5004
Number of extensions: 30616
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)