Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30803.Seq
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          109   2e-24
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   102   1e-22
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           65   3e-11
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    27   8.5  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  109 bits (261), Expect = 2e-24
 Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWT-NLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +   WT  LLPSRQFGY+VLTTS GIM HEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFFF 454
           GK+LGFF+
Sbjct: 123 GKVLGFFY 130



 Score =  103 bits (247), Expect = 8e-23
 Identities = 48/62 (77%), Positives = 56/62 (90%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR++VL+DALK+++NAEKRGKRQVLI P SKVI+KFL VM KHGYIGEF  VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  102 bits (245), Expect = 1e-22
 Identities = 47/62 (75%), Positives = 56/62 (90%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
           MVR++VL+DALK+++NAEKRGKRQV+I P SKVI+KFL VM KHGYIGEF  VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62



 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 46/64 (71%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWT-NLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +   WT  LLPSRQFGY+VLTTS GIM HEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKIL 442
           GK L
Sbjct: 123 GKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGKI 251
           +L+DAL+++ NAE+RGK   L+ P S V+V FL +M   GYI +F ++D HR GKI
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKI 60



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 25/67 (37%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRW-TNLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
           + L GR+  C  ++ R D+   +  ++   +LP+RQ+GY+V+TT  G++ HEEA ++++G
Sbjct: 62  VELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVG 121

Query: 431 GKILGFF 451
           G++LG+F
Sbjct: 122 GQVLGYF 128


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 236 QSWQDCLNLTGRLNKCGVISPRFDVPI 316
           +S +  L   GRLNK GVIS R DV +
Sbjct: 916 KSGEIILEFDGRLNKWGVISFRSDVKV 942


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,255,962
Number of Sequences: 37544
Number of extensions: 203587
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)