Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30803.Seq
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 108 2e-24
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 108 2e-24
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 108 2e-24
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 107 5e-24
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 103 9e-23
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 71 3e-13
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 70 1e-12
At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containi... 28 3.1
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 27 5.4
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 27 5.4
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 108 bits (260), Expect = 2e-24
Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWT-NLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
+ L GRLNKCGVISPRFDV + + WT LLPSRQFGY+VLTTS GIM HEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFFF 454
GK+LGFF+
Sbjct: 123 GKVLGFFY 130
Score = 103 bits (247), Expect = 7e-23
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
MVR++VL+DALKS++NAEKRGKRQV+I P SKVI+KFL VM KHGYIGEF VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 108 bits (260), Expect = 2e-24
Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWT-NLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
+ L GRLNKCGVISPRFDV + + WT LLPSRQFGY+VLTTS GIM HEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFFF 454
GK+LGFF+
Sbjct: 123 GKVLGFFY 130
Score = 103 bits (247), Expect = 7e-23
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
MVR++VL+DALKS++NAEKRGKRQV+I P SKVI+KFL VM KHGYIGEF VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 108 bits (260), Expect = 2e-24
Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWT-NLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
+ L GRLNKCGVISPRFDV + + WT LLPSRQFGY+VLTTS GIM HEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFFF 454
GK+LGFF+
Sbjct: 123 GKVLGFFY 130
Score = 103 bits (247), Expect = 7e-23
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
MVR++VL+DALKS++NAEKRGKRQV+I P SKVI+KFL VM KHGYIGEF VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 107 bits (256), Expect = 5e-24
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWT-NLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
+ L GRLNKCGVISPRFDV + + WT LLPSRQFG++VLTTS GIM HEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFFF 454
GK+LGFF+
Sbjct: 123 GKVLGFFY 130
Score = 101 bits (243), Expect = 2e-22
Identities = 47/62 (75%), Positives = 55/62 (88%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
MVR++VL+D LKS++NAEKRGKRQV+I P SKVI+KFL VM KHGYIGEF VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 103 bits (246), Expect = 9e-23
Identities = 45/68 (66%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWT-NLLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
+ L GRLN CGVISPR+D+ + + WT LLPSRQFGY+VLTTS GIM HEEAR+K++G
Sbjct: 69 VELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVG 128
Query: 431 GKILGFFF 454
GK+LGFF+
Sbjct: 129 GKVLGFFY 136
Score = 98.3 bits (234), Expect = 3e-21
Identities = 46/62 (74%), Positives = 53/62 (85%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGK 248
MVR +VL+D LKS+ NAEK+GKRQV+I P SKVI+KFLTVM KHGYI EF VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 249 IV 254
IV
Sbjct: 67 IV 68
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/67 (46%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +2
Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWTN-LLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
++L GR+N C ++ R DV N+ ++T LP+RQ+GY+V+TT GI+ HEEA ++++G
Sbjct: 62 VDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVG 121
Query: 431 GKILGFF 451
G++LGFF
Sbjct: 122 GQVLGFF 128
Score = 60.1 bits (139), Expect = 8e-10
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = +3
Query: 84 VLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGKI 251
+L+DAL++I NAEKRGK V + P S V+ FL +M + GYI F + D HR G+I
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 69.7 bits (163), Expect = 1e-12
Identities = 30/68 (44%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLTGRLNKCGVISPRFDVPINDXXRWTN-LLPSRQFGYLVLTTSGGIMXHEEARRKHLG 430
++L GR+N C ++ R DV + ++T LP+RQ+GY+V+TT GI+ HEEA ++++G
Sbjct: 62 VDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVG 121
Query: 431 GKILGFFF 454
G++LGFF+
Sbjct: 122 GQVLGFFY 129
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = +3
Query: 84 VLSDALKSIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHGYIGEFXIVDDHRAGKI 251
+L+DAL++I NAE+RGK V + P S V+ FL +M + GYI F + D HR G+I
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60
>At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 575
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 105 SIHNAEKRGKRQVLIWPCSKVIVKFLTVMMKHG 203
++HN E+ K ++L+W K+ V F + + G
Sbjct: 491 ALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG 523
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Frame = +2
Query: 275 NKCGVISPRF-------DVPINDXXRWTNLLPSRQFGYLVLTTSGGIMXHE 406
N+CGV + RF V +ND W FGYL+ SG + E
Sbjct: 142 NECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEE 192
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Frame = +2
Query: 275 NKCGVISPRF-------DVPINDXXRWTNLLPSRQFGYLVLTTSGGIMXHE 406
N+CGV + RF V +ND W FGYL+ SG + E
Sbjct: 142 NECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEE 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,163,132
Number of Sequences: 28952
Number of extensions: 165844
Number of successful extensions: 306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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