Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30800.Seq
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 120 3e-28
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 120 3e-28
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.46
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.61
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.81
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 27 1.9
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 26 4.3
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 4.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 7.6
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 10.0
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 10.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 10.0
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 10.0
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 25 10.0
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 120 bits (288), Expect = 3e-28
Identities = 52/77 (67%), Positives = 67/77 (87%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
R+RK A+R GRH G
Sbjct: 61 FRIRKTHAAKRLGRHTG 77
Score = 93.1 bits (221), Expect = 3e-20
Identities = 42/87 (48%), Positives = 57/87 (65%)
Frame = +3
Query: 255 GKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVL 434
GKR+GTA ARMP +W + KID+HLYH+LY++AKGN FK+KR L
Sbjct: 79 GKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRAL 138
Query: 435 MEYIHRKKAEKARTKMLSDQAEARRIK 515
+E+I R KAE RTK++ +Q +ARR +
Sbjct: 139 IEHIQRAKAEANRTKLIQEQQDARRAR 165
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 120 bits (288), Expect = 3e-28
Identities = 52/77 (67%), Positives = 67/77 (87%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
R+RK A+R GRH G
Sbjct: 61 FRIRKTHAAKRLGRHTG 77
Score = 93.1 bits (221), Expect = 3e-20
Identities = 42/87 (48%), Positives = 57/87 (65%)
Frame = +3
Query: 255 GKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVL 434
GKR+GTA ARMP +W + KID+HLYH+LY++AKGN FK+KR L
Sbjct: 79 GKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRAL 138
Query: 435 MEYIHRKKAEKARTKMLSDQAEARRIK 515
+E+I R KAE RTK++ +Q +ARR +
Sbjct: 139 IEHIQRAKAEANRTKLIQEQQDARRAR 165
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 224 SVFLRTRAREWTATGFLMTRPSLIILRMFC 135
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.61
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 165 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 76
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 144 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 49
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -3
Query: 515 LYSAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 390
+Y+ LSL K + + +LL + + H HTLV E +TL+L V
Sbjct: 319 VYTVQLSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 276 WQYLFSYQATVTTLSTCLCVFADTGAGVDCYRFLDDE 166
WQYLF + VT L + +F V+ FL DE
Sbjct: 219 WQYLFLIEGGVTFL-CAIVIFLVLPVSVETANFLTDE 254
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 4 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 117
G +++ K K L +S+ W D NE+NE+
Sbjct: 9 GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 460 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 368
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 405 GNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK*RRHASAARNVLTPRRRNCCRPS 584
G + K + V +E H+ + A T EA + +S A+N L +R+ +
Sbjct: 1414 GFLDKLRNVKLESHHKPRNRSAITMGKEHLIEAPNTSTK--SSPAKNELFVPKRSSVKSD 1471
Query: 585 LEKTKPRLPLRSK 623
L K +PR P S+
Sbjct: 1472 LAKVRPRYPKGSE 1484
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +1
Query: 82 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 228
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 229 RRKGR 243
R+ R
Sbjct: 349 RKSLR 353
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 438 EYIHRKKAEKARTKMLSDQAEARRIK*RRHASAARNVLTPRRRN 569
E I R + T+M Q +ARR + RR + R + +RRN
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 136 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 252
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 25 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 150
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 300 VPSVAYAHWQYLFSYQA 250
+PSV YA WQ L Y +
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,538
Number of Sequences: 5004
Number of extensions: 55047
Number of successful extensions: 158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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