Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30793.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.5  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   6.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 747 LEQ*RMTQWQLHHLP*FAPSCFATTADV 664
           + Q R   W +HHL   A +CF T  D+
Sbjct: 357 MTQLREEGW-IHHLARHAVACFLTRGDL 383


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 583 GATMQNGDGSVSTTLNSTARMPPRT*RCRHD 491
           G    NG+G  S+++  T    P + R RH+
Sbjct: 60  GGMAMNGNGMTSSSMGYTTIGSPISNRIRHE 90


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 507 QVRGGMRAVEFKVVETDPSPFCIVAPD 587
           ++RG  R   +KV E  PSP   V+P+
Sbjct: 100 EIRGPKRKT-WKVEEDSPSPTSSVSPE 125


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 122 WVCPCDGGSRSINHQGFYYLPFYS 51
           W+C     + S   + FYYLP  S
Sbjct: 49  WICALVNYNVSEISENFYYLPAMS 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,549
Number of Sequences: 336
Number of extensions: 3863
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)