Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30793.Seq
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 173 1e-43
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 167 6e-42
08_02_0657 - 19749835-19751942,19753123-19753561 134 5e-32
09_06_0271 + 21959213-21960559 44 1e-04
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 39 0.004
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 39 0.004
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602... 35 0.060
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 33 0.18
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 33 0.18
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 31 0.74
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 31 0.74
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 31 0.97
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 31 0.97
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 31 1.3
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 31 1.3
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 30 2.2
06_01_0057 - 483710-484309 29 3.9
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 29 5.2
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 28 6.9
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 28 6.9
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 173 bits (421), Expect = 1e-43
Identities = 92/178 (51%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G S K I A +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGG---MRSVEFKVIETDPAEYC 181
Query: 583 LIP*YT---VDGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
++ T DGEPIKRE+EE L+ VGYDD+GG RK ++RE+VELPLRHP LFK
Sbjct: 182 IVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQMA-QIRELVELPLRHPQLFK 237
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 167 bits (407), Expect = 6e-42
Identities = 86/175 (49%), Positives = 108/175 (61%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G K + +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVA 184
Query: 583 LIP*YTVDGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
DGEPIKRE+EE L+ VGYDD+GG RK ++RE+VELPLRHP LFK
Sbjct: 185 PDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQMA-QIRELVELPLRHPQLFK 237
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 134 bits (325), Expect = 5e-32
Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
C D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG++G
Sbjct: 79 CYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISG 138
Query: 436 NLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWLL--IP*YTVDG 609
+LFE YLKPYFM+A RP+ + D F G K ++ + + +G
Sbjct: 139 DLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEG 198
Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
+P+KRE+EE L+ GYDD+GG RK ++RE+VELPLRHP LF+
Sbjct: 199 DPVKREDEER-LDGPGYDDVGGVRKQLA-QIRELVELPLRHPKLFQ 242
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 5/63 (7%)
Frame = +2
Query: 83 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 247
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 248 ETV 256
E V
Sbjct: 76 EAV 78
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDP-SPFCIVAPDTVIHC 602
VRG M AVEFKV++T+P + IVA DT I C
Sbjct: 164 VRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFC 195
>09_06_0271 + 21959213-21960559
Length = 448
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V YDDIGGC + R++RE VELPL HP LF
Sbjct: 187 VAYDDIGGC-EAQKREVREAVELPLTHPELF 216
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V Y+D+GGC++ K+RE+VELP+ HP F
Sbjct: 165 VTYNDVGGCKEQI-EKMREVVELPMLHPEKF 194
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V Y+D+GGC++ K+RE+VELP+ HP F
Sbjct: 165 VTYNDVGGCKEQI-EKMREVVELPMLHPEKF 194
>02_02_0700 +
13058446-13058790,13059352-13059582,13060083-13060241,
13060483-13060635,13061619-13061702,13061847-13061915,
13062374-13062421,13062487-13062621
Length = 407
Score = 35.1 bits (77), Expect = 0.060
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
V Y DIGGC +++RE VELPL H L+K
Sbjct: 112 VTYTDIGGC-DIQKQEIREAVELPLTHHELYK 142
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
YD IGG + ++++E++ELP++HP LF+
Sbjct: 187 YDMIGGLDQQI-KEIKEVIELPIKHPELFE 215
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
YD IGG + ++++E++ELP++HP LF+
Sbjct: 165 YDMIGGLDQQI-KEIKEVIELPIKHPELFE 193
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
+P+ E V Y +GG R+LRE +ELPL +P LF
Sbjct: 124 DPVVYNMLHEDPGNVSYSAVGGLSDQI-RELRESIELPLMNPKLF 167
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
+P+ E V Y +GG R+LRE +ELPL +P LF
Sbjct: 123 DPVVYNMLHEDPGNVSYSAVGGLSDQI-RELRESIELPLMNPELF 166
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
V +DDIG L+E+V LPLR P LFK
Sbjct: 498 VTFDDIGALADIK-ESLQELVMLPLRRPDLFK 528
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
V +DDIG L+E+V LPLR P LFK
Sbjct: 505 VTFDDIGALSDIK-ESLQELVMLPLRRPDLFK 535
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
Y DIGG ++++E VELPL HP L++
Sbjct: 206 YADIGGLDAQI-QEIKEAVELPLTHPELYE 234
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
Y DIGG ++++E VELPL HP L++
Sbjct: 228 YADIGGLDAQI-QEIKEAVELPLTHPELYE 256
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V +DDIG R L E+V LP+R P LF
Sbjct: 653 VKFDDIGALEDVK-RTLDELVTLPMRRPELF 682
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 87 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 233
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V +DDIG + L E+V LP+R P LF
Sbjct: 676 VKFDDIGALEDVK-KTLDELVTLPMRRPELF 705
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 27 MAISDLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 62
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 26 MAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,377,013
Number of Sequences: 37544
Number of extensions: 450689
Number of successful extensions: 1189
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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