Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30793.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        101   8e-22
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          38   0.007
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                37   0.015
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.33 
SB_33442| Best HMM Match : AAA (HMM E-Value=0)                         29   3.0  
SB_53844| Best HMM Match : SRCR (HMM E-Value=0)                        28   9.2  
SB_35950| Best HMM Match : SRCR (HMM E-Value=0)                        28   9.2  
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  101 bits (241), Expect = 8e-22
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +2

Query: 80  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHC 602
           VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIVAPDTVIHC 138



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 604 DGEPIKREEEEEALNAVGYDDIGGCRK 684
           +GEP+KREEEEE+LN VGYDDIGGCRK
Sbjct: 139 EGEPVKREEEEESLNEVGYDDIGGCRK 165



 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +1

Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
           V Y DIGGC++    KLRE+VE PL HP  F
Sbjct: 81  VTYSDIGGCKEQID-KLREVVETPLLHPERF 110


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
           +P+      E    + Y D+GG  +   R+LRE++ELPL +P LF+
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQI-RELREVIELPLTNPELFQ 162


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +1

Query: 625 EEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
           +++ EA   V +  IGG  KT  + +REM+E+PL +P LF
Sbjct: 244 KKDSEAKKGVSFQSIGGL-KTQIQAVREMIEMPLTNPELF 282



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
           V + D+GG  +   RKL+E VE PL+HP  F+
Sbjct: 534 VHWSDVGG-NEMIKRKLKEAVEWPLKHPEAFQ 564


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 604 DGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
           D +P+    + E      Y DIGG   T  ++++E VELPL HP L++
Sbjct: 361 DADPMVTVMKLEKAPQESYADIGGL-DTQIQEIKESVELPLTHPELYE 407


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +1

Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
           Y+ +GG  K   ++++E++ELP++HP LF+
Sbjct: 176 YEMVGGLDKQI-KEIKEVIELPVKHPELFE 204


>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
          Length = 369

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +1

Query: 634 EEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
           EE  N V Y +IGG      +++RE VELPL H  L+K
Sbjct: 156 EEKPN-VSYAEIGGM-DIQKQEIREAVELPLTHFELYK 191


>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 415

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 578 HDAKW*WICFDHFELDGAHAPADLKVSSRWIGR*ASMKYGFKYTSNRLP-VRPSTESSIG 402
           H   W  IC+DH++L  AH      V+ R +G  A +K   K T + LP V     S +G
Sbjct: 255 HAGAWGLICYDHWDLHDAH------VACRQVGL-AGVKAVTKETVDGLPRVHLGNVSCVG 307

Query: 401 S 399
           +
Sbjct: 308 N 308


>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 501

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 578 HDAKW*WICFDHFELDGAHAPADLKVSSRWIGR*ASMKYGFKYTSNRLP-VRPSTESSIG 402
           H   W  IC+DH++L  AH      V+ R +G  A +K   K T + LP V     S +G
Sbjct: 318 HAGAWGLICYDHWDLHDAH------VACRQVGL-AGVKAVTKETVDGLPRVHLGNVSCVG 370

Query: 401 S 399
           +
Sbjct: 371 N 371


>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
 Frame = +1

Query: 427 LTGNLFEVYLKPYFMEAYRPIHRDDT-FRSAGACAPSSSKWSKQIHHHFA---SWLLIP* 594
           L+GN       P  ++ Y  +  + + F + G  +P S+ + +    H     S LL P 
Sbjct: 92  LSGNTLAALSNPA-LDNYGSLRNESSPFSAMGTLSPKSTLYQRLYGSHMTRSTSNLLTPT 150

Query: 595 YTVDGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
            T    P+ R   +       +  +   +   GRK R + ELPL  PSL K
Sbjct: 151 PTT---PLSRRFSKSMDKLRLFHTLPEMKPKKGRK-RPLPELPLNQPSLVK 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,315,781
Number of Sequences: 59808
Number of extensions: 516601
Number of successful extensions: 1312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)