Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30793.Seq
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 174 5e-44
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 165 2e-41
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 165 2e-41
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 39 0.004
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 39 0.004
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 36 0.023
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 32 0.38
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 31 0.66
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 31 0.66
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 29 2.6
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 4.6
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 28 6.1
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 8.1
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 8.1
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 174 bits (424), Expect = 5e-44
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + + I++SD++CP+EK+RM DVVSI P P++ YG R+H+L
Sbjct: 64 ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F A K + A
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVE---FKVVETEPAPAC 180
Query: 583 LIP*YTV---DGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
++ T+ +G+PIKREEEEE++N +GYDD+GG RK +++EMVELPLRHP LFK
Sbjct: 181 IVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQLA-QIKEMVELPLRHPQLFK 237
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72
Query: 251 TVA 259
+VA
Sbjct: 73 SVA 75
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 165 bits (402), Expect = 2e-41
Identities = 87/178 (48%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPAC 179
Query: 583 LIP*YTV---DGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
++ TV +G+PIKREEEEEALN VGYDD+GG RK +++EMVELPLRHP LFK
Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLA-QIKEMVELPLRHPQLFK 236
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 165 bits (402), Expect = 2e-41
Identities = 87/178 (48%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPAC 179
Query: 583 LIP*YTV---DGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
++ TV +G+PIKREEEEEALN VGYDD+GG RK +++EMVELPLRHP LFK
Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLA-QIKEMVELPLRHPQLFK 236
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
+P+ + E + Y D+GG + R+LRE+VELPL +P LFK
Sbjct: 125 DPLVYKMSHEDPGNISYSDVGGLAEQI-RELREVVELPLINPELFK 169
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
+P+ + E + Y D+GG + R+LRE+VELPL +P LFK
Sbjct: 133 DPLVYKMSHEDPGNISYSDVGGLAEQI-RELREVVELPLINPELFK 177
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V Y D+GGC+ KLRE+VE PL HP +
Sbjct: 174 VTYSDVGGCKDQI-EKLREVVETPLLHPERY 203
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
+DDIGGC ++L+E VELPL HP ++
Sbjct: 182 FDDIGGCESQI-QELKESVELPLTHPEYYE 210
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLF 744
Y+ +GG K ++++E++ELP++HP LF
Sbjct: 158 YEMVGGLDKQI-KEIKEVIELPVKHPELF 185
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLF 744
Y+ +GG T ++++E++ELP++HP LF
Sbjct: 153 YEMVGGL-DTQIKEIKEVIELPVKHPELF 180
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLF 744
Y+ +GG T ++++E++ELP++HP LF
Sbjct: 174 YEMVGGL-DTQIKEIKEVIELPVKHPELF 201
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 604 DGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
D +P+ + E Y D+GG + ++++E VELPL HP ++
Sbjct: 169 DTDPMVSVMKLEKAPQETYADVGGLDQQI-QEIKEAVELPLTHPEYYE 215
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLF 744
Y DIGGC K ++L E V LP+ H F
Sbjct: 176 YSDIGGCDKQI-QELIEAVVLPMTHKDRF 203
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,753,951
Number of Sequences: 27780
Number of extensions: 371746
Number of successful extensions: 937
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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