Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30793.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 168 3e-42
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 168 4e-42
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 163 1e-40
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 39 0.003
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 38 0.005
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 37 0.016
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 33 0.15
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 33 0.15
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 31 0.61
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 31 0.61
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 31 1.1
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 31 1.1
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.1
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 31 1.1
At5g24180.1 68418.m02845 lipase class 3-related 30 1.4
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.4
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 29 3.3
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 29 4.3
At2g24990.1 68415.m02988 RIO1 family protein similar to extragen... 29 4.3
At5g66540.1 68418.m08389 expressed protein ; supported by full-L... 27 10.0
At5g10520.1 68418.m01218 protein kinase family protein contains ... 27 10.0
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 10.0
At1g10180.1 68414.m01148 expressed protein 27 10.0
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 168 bits (409), Expect = 3e-42
Identities = 87/178 (48%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G S K I A +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSVEFKVIETDPAEYC 178
Query: 583 LIP*YT---VDGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
++ T +GEP+KRE+EE L+ VGYDD+GG RK ++RE+VELPLRHP LFK
Sbjct: 179 VVAPDTEIFCEGEPVKREDEER-LDEVGYDDVGGVRKQMA-QIRELVELPLRHPQLFK 234
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/65 (64%), Positives = 55/65 (84%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 168 bits (408), Expect = 4e-42
Identities = 87/178 (48%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G S K I A +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSVEFKVIETDPAEYC 178
Query: 583 LIP*YT---VDGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
++ T +GEP+KRE+EE L+ VGYDD+GG RK ++RE+VELPLRHP LFK
Sbjct: 179 VVAPDTEIFCEGEPVKREDEER-LDDVGYDDVGGVRKQMA-QIRELVELPLRHPQLFK 234
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/65 (67%), Positives = 56/65 (86%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 163 bits (396), Expect = 1e-40
Identities = 84/178 (47%), Positives = 112/178 (62%), Gaps = 3/178 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F G S K I A +
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSIEFKVIETDPAEYC 179
Query: 583 LIP*YT---VDGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
++ T +GEPIKRE+EE L+ VGYDD+GG RK ++RE+VELPLRHP LFK
Sbjct: 180 VVAPDTEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQMA-QIRELVELPLRHPQLFK 235
Score = 84.2 bits (199), Expect = 8e-17
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 239 RRKETV 256
+RK+TV
Sbjct: 68 KRKDTV 73
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V Y+D+GGC++ K+RE+VELP+ HP F
Sbjct: 165 VTYNDVGGCKEQI-EKMREVVELPMLHPEKF 194
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLF 744
Y DIGGC++ K+RE+VELP+ HP F
Sbjct: 204 YSDIGGCKEQI-EKIREVVELPMLHPEKF 231
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
V Y+DIGGC +++RE VELPL H L+K
Sbjct: 152 VSYNDIGGC-DIQKQEIREAVELPLTHHELYK 182
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
YD IGG + ++++E++ELP++HP LF+
Sbjct: 160 YDMIGGLDQQI-KEIKEVIELPIKHPELFE 188
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
YD IGG + ++++E++ELP++HP LF+
Sbjct: 160 YDMIGGLDQQI-KEIKEVIELPIKHPELFE 188
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
Y DIGG ++++E VELPL HP L++
Sbjct: 187 YADIGGLEAQI-QEIKEAVELPLTHPELYE 215
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 658 YDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
Y DIGG ++++E VELPL HP L++
Sbjct: 187 YADIGGLEAQI-QEIKEAVELPLTHPELYE 215
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
+P+ E + Y +GG R+LRE +ELPL +P LF
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQI-RELRESIELPLMNPELF 165
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLFK 747
V + DIG +T L+E+V LPLR P LFK
Sbjct: 411 VTFADIGSLDETK-ESLQELVMLPLRRPDLFK 441
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 610 EPIKREEEEEALNAVGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
+P+ E + Y +GG R+LRE +ELPL +P LF
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQI-RELRESIELPLMNPELF 165
>At5g24180.1 68418.m02845 lipase class 3-related
Length = 375
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 499 DTFRSAGACAPSSSKWSKQIHH-HFASWLLIP*YTVDGEPIKREEEEEAL 645
DTF G +S W+ Q H AS L+ YT++G+ ++ E EAL
Sbjct: 21 DTFNIFGPFHLTSIDWNNQYHRTSVASSLVNGVYTLEGDRLEEREGSEAL 70
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
+G++D+GG ++EM+ELP + P +F
Sbjct: 841 LGWEDVGGVTDIKNA-IKEMIELPSKFPKIF 870
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 652 VGYDDIGGCRKTTGRKLREMVELPLRHPSLF 744
V +DDIG + L E+V LP+R P LF
Sbjct: 147 VKFDDIGALEHVK-KTLNELVILPMRRPELF 176
>At2g24990.1 68415.m02988 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 537
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 604 DGEPIKREEEEEALNAVGYDDIGGCRKTTGRKLRE 708
DGE + EEEE+ +G++D RK +K++E
Sbjct: 475 DGESEEGSEEEESEEELGHEDKKAARKEHKKKVKE 509
>At5g66540.1 68418.m08389 expressed protein ; supported by
full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
Length = 524
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 625 EEEEEALNAVGYDDIGGCRKTTGRKLREMVE 717
+EE + L YDD G +K T KL+++ E
Sbjct: 235 DEETDKLGKARYDDFFGGKKETKMKLKDLSE 265
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 57 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 200
++ +I L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 36 SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 167
S NK I +IIK IY P+++ A + S S SA TT S
Sbjct: 64 SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104
>At1g10180.1 68414.m01148 expressed protein
Length = 769
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 182 AKMEQLQLFRGDTVLLKGKRRKETVASCSQTII 280
+K++QL + GD +L K K +K +A ++T+I
Sbjct: 576 SKLQQLAIIAGDVLLGKEKLQKILLARLTETVI 608
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,660
Number of Sequences: 28952
Number of extensions: 346797
Number of successful extensions: 987
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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