Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30790.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam...    48   7e-06
At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,...    46   4e-05
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ...    44   1e-04
At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol 3-phosphat...    35   0.050
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat...    34   0.12 
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    30   1.9  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    30   1.9  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    28   7.6  
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro...    27   10.0 

>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
           protein similar to SP|Q07560 Cardiolipin synthetase (EC
           2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
           profile PF01066: CDP-alcohol phosphatidyltransferase
          Length = 341

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = -3

Query: 503 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRYFDVTHATAQ-LAPTFISKV 330
           +DL+   L  +++ RD+ALV     +R ++L    +T S +F++  ++ Q + P FISKV
Sbjct: 221 KDLLHPGLVGIVLLRDVALVGGAVYLRALNLDWKWKTWSDFFNLDGSSPQKVEPLFISKV 280

Query: 329 NTAVQLLLVGTTLASPVFGYVD 264
           NT  QL LV   +  P FG  D
Sbjct: 281 NTVFQLTLVAGAILQPEFGNPD 302



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 37/57 (64%)
 Frame = -1

Query: 676 SQNNYNLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLL 506
           S   Y+ A   L  +G +D LDG++AR  K  S  +GS+LDP+ADKVL+  + ++++
Sbjct: 164 SNEMYSSAFLGLAVSGASDWLDGYVARRMKINSV-VGSYLDPLADKVLIGCVAVAMV 219


>At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,
           putative similar to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana];
           contains non-consensus CG acceptor splice site at exon 4
          Length = 233

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = -1

Query: 646 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 509
           + + A ITD LDG+IAR  +   ++ G+FLDP+ADK++VA   I L
Sbjct: 76  IFIAAAITDWLDGYIARKMR-LGSEFGAFLDPVADKLMVAATLILL 120


>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
           (PGS1) identical to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana]
          Length = 296

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = -1

Query: 646 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 509
           + + A ITD LDG++AR  +  S   G+FLDP+ADK++VA   I L
Sbjct: 140 IFIAAAITDWLDGYLARKMRLGSA-FGAFLDPVADKLMVAATLILL 184


>At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase / phosphatidylinositol
           synthase (PIS1) identical to phosphatidylinositol
           synthase (PIS1) GB:AJ000539 [gi:3367632]
          Length = 227

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 646 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 509
           L  F+   D +DGW+AR +   ST  G+ LD + D+V  A L + L
Sbjct: 47  LYFFSFCCDAVDGWVARRFNQVST-FGAVLDMVTDRVSTACLLVIL 91


>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase, putative /
           phosphatidylinositol synthase, putative similar to
           phosphatidylinositol synthase (PIS1) - Arabidopsis
           thaliana, PID:e1313354 [gi:3367632]
          Length = 225

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 670 NNYNLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 509
           +N  L   L  F+   D +DGW AR +   ST  G+ LD + D+V  A L + L
Sbjct: 36  SNKTLFSLLYFFSFCCDAVDGWCARKFNQVST-FGAVLDMVTDRVSTACLLVIL 88


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 22  LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 165
           L++  +YFV + K   L+M   I  T+     MGI+I H  S  S  F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 345 SRCKLCGCVCYIEIPTQRSRWW*AYISNDKSSHN 446
           S C +CG   +    T R+ WW A ++  +S HN
Sbjct: 214 SACHICGSQAWQTNDTSRNVWWLALLTMGESWHN 247


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 413 LPPPRTLSRYFDVTHATAQLAPTFISKVNTAVQLLL 306
           L PP++LSR+ D+     Q+ P F   ++  V+ L+
Sbjct: 632 LYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALV 667


>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
           protein low similarity to SP:P80728 Mavicyanin
           {Cucurbita pepo}; contains Pfam profile PF02298:
           Plastocyanin-like domain
          Length = 163

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 337 LIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNP 438
           +++V  S    CV + Y+ N+  GG+ ++++  P
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEP 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,313
Number of Sequences: 28952
Number of extensions: 309292
Number of successful extensions: 593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)