Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30789.Seq
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 117 7e-27
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 117 7e-27
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 113 1e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 29 1.9
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.3
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 28 4.3
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 28 5.7
08_01_0401 - 3569545-3570003 28 5.7
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 27 7.5
01_01_0357 - 2816650-2817897 27 7.5
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 234 KNGKK 248
KNGKK
Sbjct: 75 KNGKK 79
Score = 117 bits (281), Expect = 7e-27
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 421
K+ FVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 422 ERPRS 436
E+PRS
Sbjct: 138 EKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 234 KNGKK 248
KNGKK
Sbjct: 75 KNGKK 79
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 234 KNGKK 248
KNGKK
Sbjct: 245 KNGKK 249
Score = 117 bits (281), Expect = 7e-27
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 421
K+ FVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 248 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307
Query: 422 ERPRS 436
E+PRS
Sbjct: 308 EKPRS 312
Score = 113 bits (272), Expect = 9e-26
Identities = 52/63 (82%), Positives = 57/63 (90%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 421
K+ FVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 422 ERP 430
E+P
Sbjct: 138 EKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 113 bits (271), Expect = 1e-25
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 234 KNGKK 248
KNGKK
Sbjct: 146 KNGKK 150
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDEVLVAG 319
K+ FVP DGCLN I+EN+ V G
Sbjct: 149 KKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 299 DEVLVAGFGRKGHAVGDIPGVRFKVVK 379
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 330 LRPNPATSTSSFSSMWFRQPSRGTNGSLSFR 238
L P+ +T T +FS WFR PS+ T L R
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWTEEKLYAR 226
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 68 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 166
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Frame = -3
Query: 467 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRIPPLVLR 300
T GH+++ P+ L LCR E + ++ P E E H+ DL I +
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNIAQITAC 197
Query: 299 RFLR-CGLGNRHGGRMGHFLSVLN 231
C +G G + +LN
Sbjct: 198 TIQSLCKIGTHAASSGGSQVILLN 221
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 542 FFCCTQYLLCTRILHFMNL*TTRFPTAGHLSQCT-PMILVAPFSL 411
+FCC QY + I HF TR + ++ + T M +VA L
Sbjct: 43 YFCCKQYDIILLIAHFYRALRTRMKSVRNIQKITKAMKMVAASKL 87
>08_01_0401 - 3569545-3570003
Length = 152
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +3
Query: 18 TPRNTNGA*HVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 197
TP+ T G +H R + A E ++ W A P KGI + +
Sbjct: 78 TPKFTGGVLGASHMRVEAAAVAELREWEKTRSWIAGPAEDRRRRKGIAMVATTAREDEGV 137
Query: 198 SAIRKC 215
S R C
Sbjct: 138 SGRRNC 143
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 284 GLGNRHGGRMGHFLSVLNELYTDAFADGRVG 192
G+G + G +G F + +E+ +D ++GR G
Sbjct: 306 GIGGSYSGELGIFSNQTSEMESDLLSEGRSG 336
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 347 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 261
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,183
Number of Sequences: 37544
Number of extensions: 371318
Number of successful extensions: 937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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