Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30787.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.3  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 623 QHIPLSPAGVIAEEGP 670
           QHIP S A   A +GP
Sbjct: 110 QHIPASVAAAFAPQGP 125


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 196 SAPLTTVWLPSPYNKW 149
           SA + TVW+ S  N+W
Sbjct: 448 SAYVATVWINSVINRW 463


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 526 IRPIVSRITIHWAVVLQRRDWENP 597
           IRP+     I  ++ L RR  ENP
Sbjct: 484 IRPMYDAFLIDQSLALNRRRDENP 507


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 526 IRPIVSRITIHWAVVLQRRDWENP 597
           IRP+     I  ++ L RR  ENP
Sbjct: 484 IRPMYDAFLIDQSLALNRRRDENP 507


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,849
Number of Sequences: 336
Number of extensions: 3048
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)