Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30783.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 118 3e-27
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 117 5e-27
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 77 8e-15
10_08_0314 + 16683473-16683564,16683945-16683945,16684057-166842... 29 2.1
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 28 3.6
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 28 4.8
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 118 bits (284), Expect = 3e-27
Identities = 55/69 (79%), Positives = 63/69 (91%)
Frame = -1
Query: 463 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 284
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 283 IVVNLTGRL 257
IVV L GRL
Sbjct: 61 IVVELNGRL 69
Score = 105 bits (253), Expect = 1e-23
Identities = 47/60 (78%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
Frame = -3
Query: 254 KCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 78
KCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 117 bits (282), Expect = 5e-27
Identities = 54/69 (78%), Positives = 63/69 (91%)
Frame = -1
Query: 463 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 284
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 283 IVVNLTGRL 257
IVV L GRL
Sbjct: 61 IVVELNGRL 69
Score = 95.1 bits (226), Expect = 3e-20
Identities = 44/56 (78%), Positives = 49/56 (87%), Gaps = 1/56 (1%)
Frame = -3
Query: 254 KCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 90
KCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 71 KCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 77.0 bits (181), Expect = 8e-15
Identities = 34/65 (52%), Positives = 48/65 (73%)
Frame = -1
Query: 448 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 269
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 268 TGRLK 254
GR+K
Sbjct: 65 HGRIK 69
Score = 67.7 bits (158), Expect = 5e-12
Identities = 27/64 (42%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Frame = -3
Query: 269 HRQTKKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 93
H + K C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124
Query: 92 LGFF 81
LG+F
Sbjct: 125 LGYF 128
>10_08_0314 +
16683473-16683564,16683945-16683945,16684057-16684268,
16684655-16684747,16685106-16685160,16685480-16685566
Length = 179
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -1
Query: 373 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLKSVVSFHLVLMFPSTILKD 200
S +++K L V++ +G + ++ RA + + + G K +FHL+ FP+ ++ D
Sbjct: 36 SVIVLKCLFVLLHDKKMGIYALIYVLRACRYIEDDEGIRKYFAAFHLLGSFPAAVIID 93
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -1
Query: 307 VDDHRAGKIVVNLTGRLK--SVVSF 239
VDDH++G+I++ GRL V+SF
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISF 936
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 422 YRF*GVTQYVHTHHGLR 472
+RF GVT ++THHGL+
Sbjct: 470 FRFDGVTSMMYTHHGLQ 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,251
Number of Sequences: 37544
Number of extensions: 215240
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -