Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30783.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 118 2e-27
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 118 2e-27
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 118 2e-27
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 116 7e-27
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 113 6e-26
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 71 3e-13
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 71 4e-13
At1g18390.1 68414.m02297 protein kinase family protein contains ... 29 1.7
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta... 28 4.0
At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta... 27 5.3
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ... 27 7.0
At1g31690.1 68414.m03890 copper amine oxidase, putative similar ... 27 9.3
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 118 bits (284), Expect = 2e-27
Identities = 55/69 (79%), Positives = 63/69 (91%)
Frame = -1
Query: 463 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 284
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 283 IVVNLTGRL 257
IVV L GRL
Sbjct: 61 IVVELNGRL 69
Score = 105 bits (252), Expect = 2e-23
Identities = 47/60 (78%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
Frame = -3
Query: 254 KCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 78
KCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 118 bits (284), Expect = 2e-27
Identities = 55/69 (79%), Positives = 63/69 (91%)
Frame = -1
Query: 463 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 284
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 283 IVVNLTGRL 257
IVV L GRL
Sbjct: 61 IVVELNGRL 69
Score = 105 bits (252), Expect = 2e-23
Identities = 47/60 (78%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
Frame = -3
Query: 254 KCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 78
KCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 118 bits (284), Expect = 2e-27
Identities = 55/69 (79%), Positives = 63/69 (91%)
Frame = -1
Query: 463 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 284
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 283 IVVNLTGRL 257
IVV L GRL
Sbjct: 61 IVVELNGRL 69
Score = 105 bits (252), Expect = 2e-23
Identities = 47/60 (78%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
Frame = -3
Query: 254 KCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 78
KCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 116 bits (280), Expect = 7e-27
Identities = 54/69 (78%), Positives = 62/69 (89%)
Frame = -1
Query: 463 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 284
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 283 IVVNLTGRL 257
IVV L GRL
Sbjct: 61 IVVELNGRL 69
Score = 103 bits (248), Expect = 5e-23
Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
Frame = -3
Query: 254 KCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 78
KCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 113 bits (272), Expect = 6e-26
Identities = 53/71 (74%), Positives = 61/71 (85%)
Frame = -1
Query: 463 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 284
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 283 IVVNLTGRLKS 251
IVV L GRL +
Sbjct: 67 IVVELNGRLNN 77
Score = 99 bits (238), Expect = 8e-22
Identities = 43/59 (72%), Positives = 53/59 (89%), Gaps = 1/59 (1%)
Frame = -3
Query: 251 CGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 78
CGVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 78 CGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 71.3 bits (167), Expect = 3e-13
Identities = 32/64 (50%), Positives = 46/64 (71%)
Frame = -1
Query: 448 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 269
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 268 TGRL 257
GR+
Sbjct: 65 QGRV 68
Score = 66.9 bits (156), Expect = 7e-12
Identities = 29/58 (50%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Frame = -3
Query: 251 CGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 81
C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF
Sbjct: 71 CKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 70.9 bits (166), Expect = 4e-13
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = -1
Query: 448 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 269
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 268 TGRL 257
GR+
Sbjct: 65 QGRV 68
Score = 68.1 bits (159), Expect = 3e-12
Identities = 29/59 (49%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Frame = -3
Query: 251 CGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 78
C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF+
Sbjct: 71 CKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 385 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 278
+RPC + LT + +G+ E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-1) nearly identical to
starch branching enzyme class II [Arabidopsis thaliana]
GI:619939
Length = 858
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 422 YRF*GVTQYVHTHHGLR 472
+RF GVT ++THHGL+
Sbjct: 483 FRFDGVTSMMYTHHGLQ 499
>At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-2) identical to starch
branching enzyme class II [Arabidopsis thaliana]
GI:726490
Length = 716
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 422 YRF*GVTQYVHTHHGL 469
+RF GVT ++THHGL
Sbjct: 359 FRFDGVTSMMYTHHGL 374
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 603
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 240 NDTTLFSLPVRFTTILPAL*SSTI 311
N++++FS P TT++P L SS+I
Sbjct: 177 NNSSIFSTPPPVTTVMPTLPSSSI 200
>At1g31690.1 68414.m03890 copper amine oxidase, putative similar to
copper amine oxidase [Lens culinaris]
gi|15451834|gb|AAB34918
Length = 420
Score = 26.6 bits (56), Expect = 9.3
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = -1
Query: 415 AEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTG--RLKSVVS 242
AE G + +RP ++ + +T + + YI E+E K+ V LTG +K V
Sbjct: 126 AEVPGLKITEVRPDVSLVARMVTTVGNYDYIIEYEFKPSGSI-KMGVGLTGVLEVKPVEY 184
Query: 241 FHLVLM----FPSTILKDGLICSPHDSLVT 164
H + TI+ D + HD VT
Sbjct: 185 VHTSEIKEDDIYGTIVADNTVGVNHDHFVT 214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,170
Number of Sequences: 28952
Number of extensions: 176032
Number of successful extensions: 317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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