Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30782.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 54 1e-07
08_01_0202 - 1638978-1639571 50 1e-06
10_08_0502 - 18369491-18369592,18369782-18369906,18370824-183708... 31 0.70
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 1.6
01_06_0926 + 33075575-33076618 30 1.6
06_03_1506 + 30641428-30642168 29 2.1
02_02_0197 + 7689403-7691070 29 2.1
04_04_1582 - 34590698-34591199,34593849-34594690 29 2.8
03_06_0579 + 34870958-34874578 29 2.8
03_01_0483 + 3689155-3689814 29 2.8
06_03_0828 + 25137782-25138312,25141349-25141588 29 3.7
11_06_0416 + 23307984-23308281,23310083-23310900 28 4.9
05_03_0006 + 7315060-7316292 28 4.9
04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053 28 4.9
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 4.9
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 28 6.5
08_01_0229 + 1834102-1834358,1834442-1834901 28 6.5
07_03_1614 + 28152812-28153204,28153301-28153585,28153676-281539... 28 6.5
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 6.5
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 6.5
05_02_0082 - 6447848-6448103,6448464-6448591 28 6.5
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 6.5
09_04_0377 + 17086775-17088310 27 8.6
06_01_0420 + 2998269-2999195 27 8.6
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 27 8.6
03_05_0084 - 20622503-20622744,20624388-20624538 27 8.6
>02_01_0158 - 1103461-1104186
Length = 241
Score = 53.6 bits (123), Expect = 1e-07
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ED+FVHQ++I + RS+ +GE VEFA+ E G +A VTGP G
Sbjct: 22 FISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSF 77
Query: 418 VKGSPYAADKRRGYHRQYFPRQGGGRSGEG 507
VKG G F +GGG SG G
Sbjct: 78 VKGGAGGGGGGGG----GFGSRGGGGSGGG 103
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFIN 250
A + GTVKWFN G+GFI+
Sbjct: 4 AARHRGTVKWFNDTKGFGFIS 24
>08_01_0202 - 1638978-1639571
Length = 197
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ED+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG
Sbjct: 21 FITPDDGGEDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGA 76
Query: 418 VKGSPYAADKRRGYHRQYFPRQGGGRSG 501
+ G + G R Y GGGR G
Sbjct: 77 LTGGSRPSG---GGDRGYGGGGGGGRYG 101
Score = 33.9 bits (74), Expect = 0.099
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFI 247
+E+V GTVKWF+ G+GFI
Sbjct: 3 SERVKGTVKWFDATKGFGFI 22
>10_08_0502 -
18369491-18369592,18369782-18369906,18370824-18370875,
18372166-18372747
Length = 286
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 415 PVKGSPYAADKRRGYHRQYFPRQGGGRSGEGVHAEED*DSWTPAPTKGVHKEMKVK 582
P KGSP +KRR H+ + P+ G ++ + EE+ +S + AP +G K K K
Sbjct: 52 PEKGSPKKKEKRRHKHK-HKPKPDGTQA--VLKEEEESNSKSKAPAEGEKKRKKKK 104
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 337 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 426
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>01_06_0926 + 33075575-33076618
Length = 347
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGG 489
GDG + V G G +AA G G +PV+G +D RG P +GG
Sbjct: 62 GDGGGAD-PVRGGAGGSDAARGDGGGADPVRGGAGGSDAARGDGGGADPVRGG 113
>06_03_1506 + 30641428-30642168
Length = 246
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEG 507
G G + G G +G G GG G Y A +GY P GGG +G G
Sbjct: 159 GSGFGEGYGSGGGVNGGGGSGGGGGGGGGASGYRYGAGYGKGYGYGGGPGGGGGGAGGG 217
>02_02_0197 + 7689403-7691070
Length = 555
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 415 PVKGSPYAADKRRGYHRQYFPRQGGGRSGEGVHAEED*DSWTPAPTKGVHKEM 573
P G+PYA Y+ QYF + GG ++ V E+D SW +G+H+ M
Sbjct: 439 PESGTPYAHRSGYLYNLQYFVKWGGDKN---VSYEDDHLSW----VRGLHELM 484
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 453
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 337 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEGVHA 516
G+ A V ++ +A V G EP+ G A+ G + + GG G G+H
Sbjct: 219 GDQDSGAEVVNDEPVDAEVVNGIEPEPLVGESVDAEVVNGVVPEPLVGESGGSDGGGMHV 278
Query: 517 EED 525
E++
Sbjct: 279 EDE 281
>03_01_0483 + 3689155-3689814
Length = 219
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGG 489
GDG + V G +AA G G +PV+GS +D RG P +GG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARGDGGGADPVRGG 132
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
>06_03_0828 + 25137782-25138312,25141349-25141588
Length = 256
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 364 AGEKG-FEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEG 507
AGE+G EAA G GGE G A + RG R+ RQ R GEG
Sbjct: 35 AGERGEHEAAFFPGGGGEGGGGGE--AGRGRGRQRRQEGRQIRARLGEG 81
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 487 HLDEGNIGGGSHGACLQHKVSLLLAHH 407
HLD+ N+ G +G + K+SLL A H
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAH 115
>05_03_0006 + 7315060-7316292
Length = 410
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = +1
Query: 292 IARNNPRKAV---RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYH 462
I R++P A + DGE VE A E + VT G AA GY+
Sbjct: 284 IRRDDPGAAAGDDAASSDGELVECAYPPSEASVVWSVVTADGVASAGNFSSAAS---GYY 340
Query: 463 RQYFPRQGGGRSGEGVHA 516
Y+ GGG G A
Sbjct: 341 HHYYYHNGGGGDGRRTDA 358
>04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053
Length = 328
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 544 RGSTSPNPPLRGLLHRFVRHLDEGNIGGGSHGA 446
R SPN R ++HR + ++EG+ GGG GA
Sbjct: 89 RWDASPN---RHVIHRIIDAVEEGSGGGGGGGA 118
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 402 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 274
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 426
D +D + + A A NP A R G +A + + + G++ AGV G VKG
Sbjct: 106 DIADDQVLVRVAAAALNPVDAKRRAGKFKATD-SPLPTVPGYDVAGVVVKAGRKVKG 161
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 85 GVIGERRWWQRW 50
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>07_03_1614 +
28152812-28153204,28153301-28153585,28153676-28153993,
28154657-28154884,28155390-28155490,28156204-28156321,
28156445-28156726
Length = 574
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/77 (25%), Positives = 28/77 (36%)
Frame = +1
Query: 307 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQG 486
P +A + D A E AGEKG + A G PVK + R + + +
Sbjct: 28 PAEAQKQGADASA-EADAAAGEKGEQPAVAVAAAGPPVKRERRSRSSRSAHAHAHAEVRI 86
Query: 487 GGRSGEGVHAEED*DSW 537
GG E+ W
Sbjct: 87 GGSFANKARGEQVAAGW 103
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +1
Query: 325 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
S G G+ + G G G G G+PY+ + RG Y +GGG G
Sbjct: 3 SRGGGQHQRHQQQQQQPGGYGRGGGGGRGRGRDGAPYSGGRGRGQDGSYPGGRGGGYGGG 62
Query: 505 G 507
G
Sbjct: 63 G 63
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 376 GFEAAGVTGPGGEPVKGSPYAADKRRG 456
G EA G +GPGGE D RRG
Sbjct: 75 GVEAPGGSGPGGERTMAPANIDDSRRG 101
>05_02_0082 - 6447848-6448103,6448464-6448591
Length = 127
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/51 (45%), Positives = 23/51 (45%)
Frame = +1
Query: 370 EKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEGVHAEE 522
EKG EAA GP G P A D RG PR GG GEG EE
Sbjct: 59 EKGAEAASWRGPNQRSA-GWP-AGDGGRGGP----PRGGGSAGGEGGGVEE 103
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +1
Query: 319 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 432
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = +1
Query: 427 SPYAADKRRGYHRQYF-------PRQGGGRSGEGVHAEED*DSWTPAPTKGVHKEMKVKK 585
SPY D+ R R++ PR+GGG +G G + D D + +VK+
Sbjct: 70 SPYHRDRGRDVEREWARDRDHPAPRRGGGGAGAGAWSASDDDDDEQLKGLTYFEYRRVKR 129
Query: 586 EAL 594
E L
Sbjct: 130 EKL 132
>06_01_0420 + 2998269-2999195
Length = 308
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 506 PSPLRPPP*RGKYWRW 459
P P RPPP R ++W W
Sbjct: 222 PPPPRPPPVRERWWVW 237
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSG 501
G +G++ G G GG + G Y + G Y +GGG G
Sbjct: 367 GRRGYQNGGRGGRGGRGMGGGGYQNGRGGGGGGGYQNGRGGGEGG 411
>03_05_0084 - 20622503-20622744,20624388-20624538
Length = 130
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 385 AAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSG 501
AAG++ G ++ +D RRG F RQGGGRSG
Sbjct: 3 AAGLSRSGAVSLREG---SDSRRGGGGGGFFRQGGGRSG 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,852,774
Number of Sequences: 37544
Number of extensions: 342745
Number of successful extensions: 1471
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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