Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30782.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein. 119 7e-27
X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein... 119 7e-27
M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-bindi... 119 7e-27
L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A pro... 119 7e-27
BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain prote... 119 7e-27
BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain prote... 119 7e-27
BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain prote... 119 7e-27
BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein. 118 1e-26
AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant pr... 118 1e-26
BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein. 117 3e-26
M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive elemen... 117 4e-26
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 117 4e-26
M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-bindi... 117 4e-26
L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens db... 117 4e-26
BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein. 117 4e-26
BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for IM... 117 4e-26
BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1... 117 4e-26
BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein. 117 4e-26
J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein. 116 5e-26
BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2... 113 3e-25
BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2... 113 3e-25
AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-bo... 113 3e-25
DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein. 109 7e-24
AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-bo... 95 2e-19
Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C. eleg... 48 2e-05
DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein. 48 2e-05
BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for IM... 48 2e-05
BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for IM... 48 2e-05
BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein. 48 2e-05
BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein. 48 2e-05
BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein. 48 2e-05
AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C. el... 48 2e-05
AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens ... 48 2e-05
BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein. 44 3e-04
AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C. ele... 44 3e-04
AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens ... 44 3e-04
AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN... 44 3e-04
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 31 3.1
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 31 3.1
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 31 3.1
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 31 3.1
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 31 3.1
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 31 3.1
DQ323928-1|ABC54712.1| 410|Homo sapiens Spred3 protein. 30 5.4
BC000527-1|AAH00527.1| 354|Homo sapiens EWSR1 protein protein. 30 5.4
J00112-1|AAA52291.1| 60|Homo sapiens pro-alpha-1 collagen type... 30 7.2
AK125874-1|BAC86330.1| 243|Homo sapiens protein ( Homo sapiens ... 29 9.5
>X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein.
Length = 372
Score = 119 bits (287), Expect = 7e-27
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYF-PRQGGGRSGEGVHAEE 522
+GS YAAD+RR Y R Y+ R+G R+ G EE
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRGPPRNYAGEEEEE 199
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein A
protein.
Length = 372
Score = 119 bits (287), Expect = 7e-27
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYF-PRQGGGRSGEGVHAEE 522
+GS YAAD+RR Y R Y+ R+G R+ G EE
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRGPPRNYAGEEEEE 199
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-binding
protein A (dbpA) gene, 3' end. ).
Length = 412
Score = 119 bits (287), Expect = 7e-27
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 176 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 235
Query: 421 KGSPYAADKRRGYHRQYF-PRQGGGRSGEGVHAEE 522
+GS YAAD+RR Y R Y+ R+G R+ G EE
Sbjct: 236 EGSRYAADRRR-YRRGYYGRRRGPPRNYAGEEEEE 269
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 156 VLATKVLGTVKWFNVRNGYGFINR 179
>L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A
protein.
Length = 342
Score = 119 bits (287), Expect = 7e-27
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYF-PRQGGGRSGEGVHAEE 522
+GS YAAD+RR Y R Y+ R+G R+ G EE
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRGPPRNYAGEEEEE 199
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 119 bits (287), Expect = 7e-27
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYF-PRQGGGRSGEGVHAEE 522
+GS YAAD+RR Y R Y+ R+G R+ G EE
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRGPPRNYAGEEEEE 199
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 119 bits (287), Expect = 7e-27
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYF-PRQGGGRSGEGVHAEE 522
+GS YAAD+RR Y R Y+ R+G R+ G EE
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRGPPRNYAGEEEEE 199
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 119 bits (287), Expect = 7e-27
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYF-PRQGGGRSGEGVHAEE 522
+GS YAAD+RR Y R Y+ R+G R+ G EE
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRGPPRNYAGEEEEE 199
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 118 bits (285), Expect = 1e-26
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQGG 489
+GS YAAD+RR Y R Y+ R+ G
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRG 187
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant
protein.
Length = 134
Score = 118 bits (285), Expect = 1e-26
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 39 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 98
Query: 421 KGSPYAADKRRGYHRQYFPRQGG 489
+GS YAAD+RR Y R Y+ R+ G
Sbjct: 99 EGSRYAADRRR-YRRGYYGRRRG 120
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 19 VLATKVLGTVKWFNVRNGYGFINR 42
>BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 117 bits (282), Expect = 3e-26
Identities = 57/83 (68%), Positives = 66/83 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RS+GDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQGG 489
+GS YAAD+RR Y R Y+ R+ G
Sbjct: 166 EGSRYAADRRR-YRRGYYGRRRG 187
Score = 46.8 bits (106), Expect = 6e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive element
binding protein-1 protein.
Length = 322
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 73 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 132
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 133 QGSKYAAD--RNHYRRYPRRRGPPRN 156
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 53 VIATKVLGTVKWFNVRNGYGFINR 76
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 71 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 130
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 131 QGSKYAAD--RNHYRRYPRRRGPPRN 154
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 51 VIATKVLGTVKWFNVRNGYGFINR 74
>M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-binding
protein B (dbpB) gene, 3' end. ).
Length = 364
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 114 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 173
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 174 QGSKYAAD--RNHYRRYPRRRGPPRN 197
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 94 VIATKVLGTVKWFNVRNGYGFINR 117
>L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens
dbpB-like protein mRNA, complete cds. ).
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for
IMAGE:3882730) protein.
Length = 267
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 117 bits (281), Expect = 4e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein.
Length = 317
Score = 116 bits (280), Expect = 5e-26
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGEEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQGGGRS 498
+GS YAAD R ++R+Y R+G R+
Sbjct: 134 QGSKYAAD--RNHYRRYPRRRGPPRN 157
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 113 bits (273), Expect = 3e-25
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PV
Sbjct: 109 FINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPV 168
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA ++R+ R++ PR
Sbjct: 169 KGSRYAPNRRKS--RRFIPR 186
Score = 44.4 bits (100), Expect = 3e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A +V GTVKWFNV++GYGFINR
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINR 112
>BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 113 bits (273), Expect = 3e-25
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PV
Sbjct: 109 FINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPV 168
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA ++R+ R++ PR
Sbjct: 169 KGSRYAPNRRKS--RRFIPR 186
Score = 44.4 bits (100), Expect = 3e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A +V GTVKWFNV++GYGFINR
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINR 112
>AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-box
binding protein protein.
Length = 364
Score = 113 bits (273), Expect = 3e-25
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PV
Sbjct: 109 FINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPV 168
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA ++R+ R++ PR
Sbjct: 169 KGSRYAPNRRKS--RRFIPR 186
Score = 44.4 bits (100), Expect = 3e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A +V GTVKWFNV++GYGFINR
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINR 112
>DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein.
Length = 319
Score = 109 bits (262), Expect = 7e-24
Identities = 55/83 (66%), Positives = 64/83 (77%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVH TA +NNPRK +RSVGDGE VEF VV GEKG +AA VTGPGG PV
Sbjct: 70 FIHRNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGEKGAKAANVTGPGGVPV 129
Query: 421 KGSPYAADKRRGYHRQYFPRQGG 489
+GS YAAD R ++R+Y PR G
Sbjct: 130 QGSKYAAD--RNHYRRY-PRPRG 149
Score = 45.6 bits (103), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFI+R
Sbjct: 50 VIATKVLGTVKWFNVRNGYGFIHR 73
>AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-box
binding protein variant protein.
Length = 268
Score = 94.7 bits (225), Expect = 2e-19
Identities = 46/70 (65%), Positives = 54/70 (77%)
Frame = +1
Query: 271 VFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 450
+F +QTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++R
Sbjct: 23 LFPNQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRR 82
Query: 451 RGYHRQYFPR 480
+ R++ PR
Sbjct: 83 KS--RRFIPR 90
>Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein.
Length = 250
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127315) protein.
Length = 227
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127314) protein.
Length = 227
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 34 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ16517 fis, clone NT2RI3007167. ).
Length = 250
Score = 48.4 bits (110), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFIN 250
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein.
Length = 209
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 5.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C.
elegans) protein.
Length = 209
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 5.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens
cDNA FLJ12457 fis, clone NT2RM1000666, weakly similar to
DNA-BINDING PROTEIN A. ).
Length = 209
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 5.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN-28
protein.
Length = 209
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 411
D DVFVHQ+ + + RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 67 DPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 30.3 bits (65), Expect = 5.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINRMTPR 265
+G KWFNV+ G+GF++ MT R
Sbjct: 41 AGICKWFNVRMGFGFLS-MTAR 61
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
GE+GF G+ GP GEP K P A RG P G GE
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
GE+GF G+ GP GEP K P A RG P G GE
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
GE+GF G+ GP GEP K P A RG P G GE
Sbjct: 544 GERGFP--GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 587
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
GE+GF G+ GP GEP K P A RG P G GE
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
GE+GF G+ GP GEP K P A RG P G GE
Sbjct: 965 GERGFP--GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1008
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
GE+GF G+ GP GEP K P A RG P G GE
Sbjct: 971 GERGFP--GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1014
>DQ323928-1|ABC54712.1| 410|Homo sapiens Spred3 protein.
Length = 410
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 400 GPGGEPVKGSPYAADKRRGYH-RQYFPRQGGGRSGEGVHAEE 522
GP P K SP A + R H R F R+ GR G A +
Sbjct: 279 GPSSAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPD 320
>BC000527-1|AAH00527.1| 354|Homo sapiens EWSR1 protein protein.
Length = 354
Score = 30.3 bits (65), Expect = 5.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 367 GEKGFEAAGVTGPG-GEPVKGSPYAADKRRGYHRQYFPR--QGGGRSGEGVHAE 519
G G E+ G +GPG + G R G+ R R +GGGR G G+ +E
Sbjct: 276 GVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGLQSE 329
>J00112-1|AAA52291.1| 60|Homo sapiens pro-alpha-1 collagen type 1
protein.
Length = 60
Score = 29.9 bits (64), Expect = 7.2
Identities = 19/46 (41%), Positives = 20/46 (43%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGE 504
GE+GF G GP GEP K P A RG P G GE
Sbjct: 4 GERGFP--GPLGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 47
>AK125874-1|BAC86330.1| 243|Homo sapiens protein ( Homo sapiens
cDNA FLJ43886 fis, clone TESTI4009283. ).
Length = 243
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 397 TGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEGVHAEE 522
T G P +G+P+ D+ G R PR+GG E +H +
Sbjct: 99 TSQTGRPGRGAPHLPDRVAGQRRSSPPRRGG--RAEALHTSQ 138
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,391,530
Number of Sequences: 237096
Number of extensions: 1806519
Number of successful extensions: 5608
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 5043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5606
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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