Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30782.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 44 8e-05
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 44 8e-05
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 41 7e-04
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 39 0.002
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 32 0.33
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 32 0.33
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 32 0.33
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 29 1.8
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 29 1.8
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 29 1.8
At3g45830.1 68416.m04960 expressed protein 29 1.8
At2g45590.1 68415.m05669 protein kinase family protein contains ... 29 1.8
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138... 29 3.1
At2g41420.1 68415.m05111 proline-rich family protein contains pr... 29 3.1
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 28 4.1
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 28 4.1
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein... 28 4.1
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 28 4.1
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 27 7.2
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 27 7.2
At5g35770.1 68418.m04285 sterile apetala (SAP) identical to ster... 27 7.2
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 27 7.2
At4g16550.1 68417.m02504 heat shock protein-related contains sim... 27 7.2
At2g47920.1 68415.m05991 kinase interacting family protein simil... 27 7.2
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 27 7.2
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 44.0 bits (99), Expect = 8e-05
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAGEKG 378
G + Q+ F DD +D+FVHQ++I + RS+ EAVEF V +
Sbjct: 13 GSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 379 FEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEG 507
+A V+GP G PV+G+ + G + +GGGR G
Sbjct: 69 PKAIDVSGPDGAPVQGN--SGGGSSGGRGGFGGGRGGGRGSGG 109
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 191 EKVSGTVKWFNVKSGYGFI 247
E+ G+VKWF+ + G+GFI
Sbjct: 9 ERRKGSVKWFDTQKGFGFI 27
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 44.0 bits (99), Expect = 8e-05
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ++FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG
Sbjct: 26 FITPDDGSVELFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGG-- 79
Query: 418 VKGSPYAADKRRGYHRQYFPRQGGGRSG 501
GS + RG R+GGG SG
Sbjct: 80 --GSLKKENNSRGNG----ARRGGGGSG 101
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFI 247
A + +G V WFN GYGFI
Sbjct: 8 AARSTGKVNWFNASKGYGFI 27
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 40.7 bits (91), Expect = 7e-04
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G + Q+ F D +D+FVHQ++I + RS+ E+VEF V G
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSGR 72
Query: 382 -EAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSG 501
+A V+GP G PV+G+ G R F GGGR G
Sbjct: 73 PKAIEVSGPDGAPVQGNSGGGGSSGG--RGGF-GGGGGRGG 110
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 191 EKVSGTVKWFNVKSGYGFI 247
++ GTVKWF+ + G+GFI
Sbjct: 13 DRRKGTVKWFDTQKGFGFI 31
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 196 SIGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 375
SIG + F DD E++FVHQ++I + RS+ GE+VE+ + G
Sbjct: 11 SIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIALGSD 66
Query: 376 G-FEAAGVTGPGG 411
G +A VT PGG
Sbjct: 67 GKTKAIEVTAPGG 79
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +1
Query: 325 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQG 486
S G+ + + GE G G+TG G EPVK KRRG R+Y P G
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGPDSG 111
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +1
Query: 325 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQG 486
S G+ + + GE G G+TG G EPVK KRRG R+Y P G
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGPDSG 111
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +1
Query: 325 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQG 486
S G+ + + GE G G+TG G EPVK KRRG R+Y P G
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGPDSG 111
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 334 DGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEG 507
DG+ ++ +V AA P G+P+ + RG ++ R GGGR G G
Sbjct: 152 DGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGG 209
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 334 DGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEG 507
DG+ ++ +V AA P G+P+ + RG ++ R GGGR G G
Sbjct: 88 DGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGG 145
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 334 DGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRSGEG 507
DG+ ++ +V AA P G+P+ + RG ++ R GGGR G G
Sbjct: 154 DGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGG 211
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 220 QRQEWIWFHQQDDTK--EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAG 393
+R+ W++ H+ + + ED T + ++A + EAV A + E+ E
Sbjct: 1161 ERKLWVYLHRDREQEDFEDDGTSSTKKWKRPKKEAAEQTEEQEAVTVAFLGNEEQTE--- 1217
Query: 394 VTGPGGEPVKGSPYAADKRRG 456
T G EP G P D +G
Sbjct: 1218 -TEMGSEPKTGEPTGLDGDQG 1237
>At2g45590.1 68415.m05669 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 683
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +1
Query: 238 WFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEP 417
WFH+ DD V H + R ++ DG + E V G+K + +G+
Sbjct: 472 WFHR-DDGASSVHDHNLNPTKRKKRNSIDWWVDGLSGELKSVMGKKNSQDSGLWCDVNVQ 530
Query: 418 VKGSPYAADKRRGYHRQYFPRQGGG 492
G + RG P GGG
Sbjct: 531 KSGGVSSTPSMRGTVCYIAPECGGG 555
>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 677
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 536 HES*SSSAWTPSPLRPPP*RGKYW 465
H+S S+ P PL PPP R KY+
Sbjct: 419 HDSLKSTRQRPQPLPPPPARPKYY 442
>At2g41420.1 68415.m05111 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 98
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 391 GVTGPGGEPVKGSPYAADKRRGYHRQYFPRQG 486
GV P G P +G P A +GY Q +P+QG
Sbjct: 10 GVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQG 41
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYH-RQYFPRQ-GGGRSGEG 507
G +G G G GG G P +++ R G Q P+ GGGR G G
Sbjct: 399 GGRGGGGRGGYGRGGGEFSGRPKSSNPRNGGEGYQRVPQNGGGGRGGRG 447
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYH-RQYFPRQ-GGGRSGEG 507
G +G G G GG G P +++ R G Q P+ GGGR G G
Sbjct: 398 GGRGGGGRGGYGRGGGEFSGRPKSSNPRNGGEGYQRVPQNGGGGRGGRG 446
>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
similar to zinc finger protein GB:AAA75253; some members
of this protein family have a weak CCHC zinc fingers
that is mostly from retroviral gag proteins
(nucleocapsid)
Length = 409
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 400 GPGGEPVKGSP---YAADKRRGYHRQYFPRQGGGRSGEG 507
GP G+ V+G D+R G+++ P +GGGR G+G
Sbjct: 280 GPDGKLVEGKGRLGVITDRRAGHYK---PMKGGGRKGKG 315
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 218 FNVKSGYGFINRMTPRKMCLCIRLPS 295
F S +GF+ ++ +K+C I+LPS
Sbjct: 623 FRAMSQHGFLGQLQDKKLCAVIQLPS 648
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 293 SPVTTHVRLCARSATERRWSLPWL 364
+PV T VR+C + +TE SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 76 GERRWWQRW*NTPRPLLDV 20
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At5g35770.1 68418.m04285 sterile apetala (SAP) identical to sterile
apetala (GI:9758652) [Arabidopsis thaliana].
Length = 446
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 211 EMVQRQEWIWFHQQDDTKEDVFVHQTAIARN 303
+++ RQ W H DT D F+++ ARN
Sbjct: 85 QLLSRQVWARTHLMHDTWRDEFIYRHRTARN 115
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 76 GERRWWQRW*NTPRPLLDV 20
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At4g16550.1 68417.m02504 heat shock protein-related contains
similarity to Swiss-Prot:P31170 small heat shock
protein, chloroplast precursor [Arabidopsis thaliana]
Length = 743
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +1
Query: 409 GEPVKGSPYAADKRRGYHRQYFPRQGGGRSG--EGVHAEED*DSWTPAPTKGVHKE 570
G G P+A D GY+ P Q G G E + EE D + G+ KE
Sbjct: 154 GTATDGFPHATDPNDGYYATNNPYQVNGPKGFTEFKYLEETHDLFVRLDFPGIQKE 209
>At2g47920.1 68415.m05991 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 225
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 220 QRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFA 357
++ W WF +K ++ T + KA+ + DG A FA
Sbjct: 6 EKSRWWWFESHKSSKHSQWLQSTLAEIDAKTKAMLKLLDGNADSFA 51
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -2
Query: 495 SSATLTREILAVVATALVCSIR*AFYWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRA 322
S A E+L+VV T ++ + + +GT N SC + +L KL RLS D A
Sbjct: 73 SMAQHETEVLSVVRTLMLTIKEKDLHSVKSGTCNASCIRFYL----AKLLRLSGYDAA 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,580
Number of Sequences: 28952
Number of extensions: 230384
Number of successful extensions: 738
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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