Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30780.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    71   1e-13
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   5.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   9.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.7  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
           F+  +KKLM+  KF      +VDM KV ++VLKPWI  ++ E++  ED+VVI +V   LE
Sbjct: 16  FTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDEVVINFVYGMLE 75

Query: 435 EKFPC-------------PKKMQINLTGFLNGKNARLLWESYGS 527
           E                 P+K+Q+NLTGFL   NA    E   S
Sbjct: 76  EAVEASKTSDSQNESTLDPRKVQLNLTGFLE-SNATAFTEELWS 118


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 468 NLTGFLNGKNARLLWESYGSC 530
           NL  F+NGKN    +  Y SC
Sbjct: 363 NLWSFVNGKNLTASYNGYTSC 383


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 360 ITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQIN 470
           +T  IT+    E+D   EYV  +   K P P K   N
Sbjct: 369 VTHTITK--TEENDSTTEYVNTESSSKTPAPHKHTFN 403


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 484  RNPVKLICIFFGHGNFSSSWLVTYSMTTSSS 392
            R P KL+  FFGH + +  + ++++   + +
Sbjct: 1108 REPFKLVLEFFGHADTNMRYKISWTQLNTQA 1138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,233
Number of Sequences: 5004
Number of extensions: 46057
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)