Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30780.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900... 89 2e-18
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 33 0.20
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 0.80
09_04_0528 - 18348071-18348136,18348477-18351209 28 5.6
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 27 7.5
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20... 27 9.9
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930... 27 9.9
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954... 27 9.9
>03_02_0509 -
9003330-9003446,9003587-9003673,9004113-9004280,
9004835-9004957,9005081-9005170,9005275-9005295
Length = 201
Score = 89.0 bits (211), Expect = 2e-18
Identities = 41/87 (47%), Positives = 58/87 (66%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+ KL+K KF L VDM+KVK+DV+KPWI ++TE+L ED+V+I ++ LE
Sbjct: 17 FSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKNARLLWE 515
EK KK+QI LTGF+ + + E
Sbjct: 77 EKEADGKKIQIQLTGFMEKNTVKFMKE 103
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 491 KERTPFMGELWELLLSAQ 544
K FM ELW LLLSAQ
Sbjct: 95 KNTVKFMKELWSLLLSAQ 112
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 32.7 bits (71), Expect = 0.20
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 348 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQI 467
++PWI +KI E L E+ +++Y+ + ++ K +++
Sbjct: 843 MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLEL 882
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 267 EKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILN 389
+KKLMK+ + T Q D+S KL KP + ++EI+N
Sbjct: 339 DKKLMKKQQHSKKRTAQADVSDAKLCRRKPKKVRLLSEIIN 379
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/68 (22%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +3
Query: 270 KKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYV----TNQLEE 437
+++ K+++ + +++ M+ K +V++ WI Q + + + +DVV E++ N+ ++
Sbjct: 49 RQIKKELEIINAFLKELGMNGYKGEVVETWIRQ-VRRLAHDMEDVVDEFMYVVGKNKHKK 107
Query: 438 KFPCPKKM 461
+ C KK+
Sbjct: 108 SWACVKKI 115
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 252 PFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVL----KPWITQKITEILNMEDDVVIEY 416
P S++ ++ K+ F D T+ +D+SK L L + + K E+ +M+D V+ Y
Sbjct: 120 PQSNRRRRGTKRTAFSDSDTEDLDLSKEDLTKLVLEKEELLKSKDEEVKDMKDKVLRSY 178
>11_01_0027 -
199196-199396,199514-199651,200207-200284,200419-200604,
200754-200846,201665-201731,202374-202675
Length = 354
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 479 SSQVDLHFLWAWELFFKLVGDIF 411
+S +DL + WAW L++ G +F
Sbjct: 69 ASSIDLAWAWAWPLYWAAQGTMF 91
>06_03_0223 -
18391177-18391287,18391570-18392081,18392200-18393019,
18393603-18393671,18393973-18394062,18395381-18395575
Length = 598
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 487 FRNPVKLICIFFGHGNFSSSWLVTYSMTTSSSMFRISV 374
F + VKL FGHG S W+ Y++ +SS +++
Sbjct: 520 FNSRVKL----FGHGKLRSKWMGPYTVVDASSQGAVTL 553
>04_04_0173 -
23294511-23294601,23294719-23294849,23295160-23295483,
23296016-23296147,23296225-23296373,23296536-23296670,
23296997-23297090,23297199-23297318,23298096-23298182,
23298273-23298386,23299089-23299270,23299960-23300023,
23300191-23300337,23300636-23300845,23301048-23301217,
23301355-23301477,23301589-23301661,23301765-23301857
Length = 812
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 288 MKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQL 431
M+FG+ L + + VK DVL+P I +I E+L ++T QL
Sbjct: 477 MEFGN-LRSFIKLFGVKCDVLEPTILFRIIEVLQSTYKAGNLHITEQL 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,405
Number of Sequences: 37544
Number of extensions: 268740
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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