Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30780.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   1e-18
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 5/69 (7%)
 Frame = +3

Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE-EKFPCPKKMQINLTGFLNGKNA 500
           M K+ LDVLKPWIT++IT++L  EDDVV+E+V N LE EK P PK MQIN+TGFL  KNA
Sbjct: 1   MEKINLDVLKPWITKRITDMLGFEDDVVLEFVFNMLESEKHPDPKVMQINITGFLQAKNA 60

Query: 501 RL----LWE 515
           R+    LWE
Sbjct: 61  RIFMGELWE 69



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 437 KVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQ 544
           K P PK     +    + K    FMGELWELL+SAQ
Sbjct: 40  KHPDPKVMQINITGFLQAKNARIFMGELWELLVSAQ 75


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +3

Query: 312  QQVDMSKVKLDVLKPWITQ--KITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFL 485
            QQ D+ + K++ +K    +  KI E+ +   +VV +++ + L+E+     +  I++   L
Sbjct: 2092 QQRDILQEKIEYVKNQYEEACKIKEVNDKRGEVVSKFLESYLDEEEFADFQYYIDMKTQL 2151

Query: 486  NGKNARL----LWESYGSCC*ARR 545
               +A +       S+GSCC  RR
Sbjct: 2152 ALMHAEIRDKHTCSSFGSCCSCRR 2175


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
 Frame = +3

Query: 261 DKEKKLMKQMKFGDCL---TQQVDMSKVKL-----DVLKPWITQKITEILNMEDDV-VIE 413
           D   +LMK + F DC+   TQQ +  +++      D+LK +++   +EI   ED + V +
Sbjct: 40  DPRDRLMKPLSFSDCVGNETQQTEDPRIQWRQQQEDMLKEYLSLAQSEINEKEDFLNVKK 99

Query: 414 YVTNQLEEKF 443
              N  +E+F
Sbjct: 100 QRLNVAQEEF 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,060
Number of Sequences: 59808
Number of extensions: 320881
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)