Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30780.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.67 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.88 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 AGHPFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMED 398
           A      +E  L    K G C   Q  MSK++    KP + ++ T++  +E+
Sbjct: 5   ASQLLKSRESLLSNAYKQGFCQPTQRTMSKIQWRKPKPAMVEEKTQLRYLEE 56


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 452 KENADQLDWIPKWKERTP 505
           +++ DQ +W+ +WKE  P
Sbjct: 621 QQHLDQWNWVYEWKELIP 638


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   LIYFILVILLLEYFVFLKHTF 65
           LIYFI  I L  Y+ FL+  F
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAF 240


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +2

Query: 443 PMPKENADQLD-WIPKWKE 496
           P   E   Q + WIPKW++
Sbjct: 410 PSTMERQTQTEVWIPKWRQ 428


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 294 TSFASSASSPCH*TGVLLCTSSRIHHHLAN 205
           T+  ++A++    TG++   + + HHHL N
Sbjct: 117 TTATAAATATTTATGLIKQETLQRHHHLQN 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,098
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)