Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30780.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    85   3e-17
At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative...    28   3.6  
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    28   3.6  
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro...    28   4.7  
At5g41000.1 68418.m04984 oligopeptide transporter OPT family pro...    28   4.7  
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    27   6.2  
At4g13820.1 68417.m02141 disease resistance family protein / LRR...    27   8.3  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
           FS+K+ KLMK  KF   L   VD++KVK+DV+KPWI  ++TE+L +ED+V+I ++   L+
Sbjct: 17  FSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELLGIEDEVLINFIYGLLD 76

Query: 435 EKFPCPKKMQINLTGFL---NGKNARLLW 512
            K    K++QI LTGF+    GK  + LW
Sbjct: 77  GKVVNGKEIQITLTGFMEKNTGKFMKELW 105


>At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative /
           ATP-AMP transphosphorylase, putative similar to
           SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3)
           (ATP-AMP transphosphorylase) {Zea mays}; contains Pfam
           profile PF00406: Adenylate kinase
          Length = 283

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 306 LTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEK 440
           LTQ+ D ++ K  +      Q ++++L+M DD+ I+   N+ +E+
Sbjct: 214 LTQRFDDTEEKAKLRLKTHNQNVSDVLSMYDDITIKIEGNRSKEE 258


>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEE-KFPCPKKMQINLTGFLN 488
           M +VKL  +K  +T K+TE  N+  D VIE V  Q+++ K P  + +++   G ++
Sbjct: 248 MFEVKLREIKTVLTSKVTEESNV--DEVIESVKQQIKDAKLPDIEVVRVVWDGLMD 301


>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
           protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
           zinc finger-containing protein ZIGA3 GI:10441352 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 483

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 318 VDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKN 497
           V +SKV+   L  W+ +++  I +M +D    Y     E + P P   ++ +  F+  K 
Sbjct: 63  VHISKVRSATLDTWLPEQVAFIQSMGNDKANSY----WEAELP-PNYDRVGIENFIRAKY 117

Query: 498 ARLLWESYG 524
               W S G
Sbjct: 118 EEKRWVSRG 126


>At5g41000.1 68418.m04984 oligopeptide transporter OPT family
           protein contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 670

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 446 MPKENADQLDWIPKWKERTPFMGELWELLL 535
           +P+ N D  +++P+WKE+    G +   LL
Sbjct: 17  LPETNLDHGEYVPEWKEQITIRGLISSALL 46


>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|P47823
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 330 KVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEE-KFPCPKKMQINLTGFLN 488
           +VKL  +K  +T ++TE +N+  D V E V  Q+++ K P  + + +   G +N
Sbjct: 250 EVKLKEIKAVLTSQVTEEINV--DEVTEMVKQQVKDAKLPETEVVHVIWDGIMN 301


>At4g13820.1 68417.m02141 disease resistance family protein / LRR
           family protein contains leucine rich-repeat (LRR)
           domains Pfam:PF00560, INTERPRO:IPR001611; similar to
           disease resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 719

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 391 WKMMLSLNMSPTSLKKSSHAQRKCRST*LDS*MERTHAFY 510
           W + L L++S + L  +SH +  CR    ++ +E  + FY
Sbjct: 6   WSLCLILSLSNSKLVLASHVKHLCRQDQKNALLEFKNEFY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,577,272
Number of Sequences: 28952
Number of extensions: 230571
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)