Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30774.Seq
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    98   7e-22
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    98   7e-22
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   3.4  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   4.5  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 97.9 bits (233), Expect = 7e-22
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62



 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
 Frame = +2

Query: 260 LTGRLNKCGVISPRFDVPINXIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 436
           L GR+NKCGVISPRF+V +  IE+W N LLPSRQ G +VLTTS GIM H EAR K  GGK
Sbjct: 65  LNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGK 124

Query: 437 ILGLLF 454
           ILG  +
Sbjct: 125 ILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 97.9 bits (233), Expect = 7e-22
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62



 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
 Frame = +2

Query: 260 LTGRLNKCGVISPRFDVPINXIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 436
           L GR+NKCGVISPRF+V +  IE+W N LLPSRQ G +VLTTS GIM H EAR K  GGK
Sbjct: 65  LNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGK 124

Query: 437 ILGLLF 454
           ILG  +
Sbjct: 125 ILGFFY 130


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 359 FGYLVLTTSGGIMDHEEARRKHLGGKILGLL 451
           FGY+V+TT+    +   A  K LG ++L ++
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVLNVV 828


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 348 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 437
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,671
Number of Sequences: 5004
Number of extensions: 30215
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)